Xxan066222.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xestia xanthographa
Gene Symbol
-
Assembly
GCA_905147715.1
Location
LR990671.1:8629275-8634657[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.042 8.4 9.0 2.8 1 22 69 90 69 92 0.90
2 20 0.068 14 8.4 0.2 2 23 122 144 121 144 0.96
3 20 0.39 77 6.0 4.9 2 23 167 188 166 188 0.97
4 20 0.0035 0.7 12.4 0.1 1 23 192 214 192 214 0.97
5 20 0.13 25 7.5 3.5 1 23 219 242 219 242 0.92
6 20 0.047 9.3 8.9 0.9 2 23 250 272 249 272 0.93
7 20 0.00023 0.046 16.2 0.8 2 23 280 302 279 302 0.96
8 20 0.0071 1.4 11.5 2.9 1 23 308 330 308 330 0.95
9 20 3.3e-06 0.00065 22.0 3.7 1 23 336 358 336 358 0.99
10 20 0.28 55 6.5 0.4 1 15 364 378 364 381 0.92
11 20 3.2e-05 0.0063 18.9 0.2 1 23 451 474 451 474 0.97
12 20 0.073 14 8.3 0.1 2 23 503 525 502 525 0.94
13 20 2 4e+02 3.7 6.6 2 23 548 569 547 569 0.96
14 20 0.0041 0.82 12.2 2.4 1 23 573 595 573 595 0.98
15 20 1.5 2.9e+02 4.2 0.6 1 15 600 614 600 620 0.77
16 20 0.1 21 7.8 0.4 2 23 632 654 632 654 0.93
17 20 0.00027 0.053 16.0 1.8 1 23 661 684 661 684 0.97
18 20 0.00097 0.19 14.2 5.4 1 23 690 712 690 712 0.98
19 20 3.3e-07 6.6e-05 25.1 0.8 1 23 718 740 718 740 0.99
20 20 0.027 5.3 9.7 7.6 1 23 746 769 746 769 0.96

Sequence Information

Coding Sequence
ATGGAGCAACTTGGGCCACTACAAAGTAACATCAAATTAAAGAAAGTACCTGAATCAAAACCAAATAAACTGACAACAAAGCCAAAGCCCGCTGGTAAAACAAAGCCGTCTGTCAGAGAAGAACTCGAAAAACAATCGAATAACACGCAAATTATTATAATGTGCAGCAATGCGACCCCTTTCCTTCAAAAGATTGACACGGGGTACGTCTGTTGCTACTGCAAGGAACAATATCAGGACCCTGCCGATCTAAAGAAGCATAACCATGAAATTCATGGAGACCAATATGACCCAGTATCTCCAAATGTTATTATGAACAGCAGGAAAAATGAATTTTGCATCAAATTAGACATTACAGGCTTACAATGTAAACTCTGCAGCACAGACATTACGTCTTTAGAGGCACTTAAAGATCATCTCCAAAGTGAGCACAAAAAGAAGATATTTACGGATATCAAGAATAAGATCATGCCATTCAAGTTCGAAAGTGAAGATATCCGCTGCTGCATATGTTCCAACGTCTTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTACAGGAACTTTGTTTGCGAGCAGTGCGATCTAGGTTTCGTGACCCTTCTAAGTCTAAAAAGTCATGCAGAAAAACACAAATTGGGCGAATTTAAATGCCAGTATTGCCCCAAGATATATGATACACATCGAAAGAAAAAATCGCACGAAAAAGCAGTACATGTAACGGGATATTTATTGAGCAGGTGCGGGTACTGTAACGAACGATTCACGAGTACCAAAAACAAGGATGAACATTTAGCCAAAGTACACGGCGTTCAGTTACGCGCACTCAAGTGTCAAGCTTGTGATAAAACTTACGAGAACAAGAGAGCTTTGACAATACACACGAGGAGAGATCACTTGATGGAAAGAAAACATAAATGCTCCCAATGTGAAATGTCATTCTTCAACTCTAATAGCTTAAAAATGCACGCAGTCAAGCATTCAGGCTTGAAGGAATTTCAATGTGGCGTATGCCAGAAGTGTTACGCTCAAAAAAAGACCTTAAAGCAGCATATGAGGATACATTCAGATGAGAGACGCTTTCAGTGCGAACGCTGCGAGCAAGCATTCGTGAAGAAAAGTAACCAAGAAACAGTGAGCAAGAAAGTTGAAATCAAACCTTTAGAACCAGCTGTATTAGTTATCGTAGGACCTGAAAGAAAAACCAAATTGCAGGTAAATACTACGCCCAAAGTGCACGTCAAAACGCATGTCGGTGAGTTGGGGAAACATCGCCACAACCTCGATCAAATCTTGCAATTTTCTAACGCAACACCAATAATGCGTCGCGGAGGCGTTGGATATAAGTGCAGTTACTGTTTTCAAGAATTCCCAGACCCTGCAGACCTAAAAAAGCATACACTTGTAATTCACACGAGTAAAACAGACCCTAAACTAAGGCTTGCTAAAAGCCCAGGCATATCAGAATACATTGTCAAAATAGACATCACAAACCTTGAGTGCACGGAATGTGCTAAAACCATAGACAGTCTAGAAGACCTATTGACCCATCTGAAAGGAGAACATAAAAAAATGATATACACTGACATTCCCAATCATTTCATTCCTTTCAAATTTCTCACCGATGATCTTACTTGCTGCCTATGTCAGAGTACTTTCGACAAGTTTAAAAAACTTCAAGAGCATATGCACTCACACTACAGGAACTACGTGTGTGAAGAATGCGATTCTGGGTTCGTTACTCAGGGATGTTGGCACAGACATCGCAGCACACACTTAAAAGGGGACTTCCCTTGCAGCTTCTGTCCCAAGGTCTACGACACGATAGTGAAGAAGCGGTATCATGAGCGATGTTGCCACATTCACGCTGATATGCTCCCCAATAGATGCGCATTCTGTAACAAAGGCTTTAAAGAGTACTACGATAAGGAAATCCACATGACTGAAGTCCACGGTGCGAAAGCGCCACTGTATAACTGTAATGCTTGCGACAGGAGTTATAAAAGCAAGCGTAAACTGAGGGTCCACGTCAAAAGAGACCATCTATTAGAGAGGAGGCACAAATGTCTGACCTGCGACATGAGTTTTTTTACATCTCATGATGTTAAGAAGCATATGATCACACACACGGGGGAAAGGAACTTTCAATGCGAAATTTGTCTGAAATCTTTTGGGAGAAACTCCACTCTTCAAAGTCATATGAGAATCCATAACAATGATCGACGATTTAAATGTGAATTTTGTGGGAGGTCGTTTATTCAAAAGTGCACCTGGAAAAGCCATTGTAGAACTACACATGGACAGACATATCCATAG
Protein Sequence
MEQLGPLQSNIKLKKVPESKPNKLTTKPKPAGKTKPSVREELEKQSNNTQIIIMCSNATPFLQKIDTGYVCCYCKEQYQDPADLKKHNHEIHGDQYDPVSPNVIMNSRKNEFCIKLDITGLQCKLCSTDITSLEALKDHLQSEHKKKIFTDIKNKIMPFKFESEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLLSLKSHAEKHKLGEFKCQYCPKIYDTHRKKKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRALKCQACDKTYENKRALTIHTRRDHLMERKHKCSQCEMSFFNSNSLKMHAVKHSGLKEFQCGVCQKCYAQKKTLKQHMRIHSDERRFQCERCEQAFVKKSNQETVSKKVEIKPLEPAVLVIVGPERKTKLQVNTTPKVHVKTHVGELGKHRHNLDQILQFSNATPIMRRGGVGYKCSYCFQEFPDPADLKKHTLVIHTSKTDPKLRLAKSPGISEYIVKIDITNLECTECAKTIDSLEDLLTHLKGEHKKMIYTDIPNHFIPFKFLTDDLTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTQGCWHRHRSTHLKGDFPCSFCPKVYDTIVKKRYHERCCHIHADMLPNRCAFCNKGFKEYYDKEIHMTEVHGAKAPLYNCNACDRSYKSKRKLRVHVKRDHLLERRHKCLTCDMSFFTSHDVKKHMITHTGERNFQCEICLKSFGRNSTLQSHMRIHNNDRRFKCEFCGRSFIQKCTWKSHCRTTHGQTYP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00301425;
90% Identity
iTF_01062103;
80% Identity
-