Ncom024342.1
Basic Information
- Insect
- Noctua comes
- Gene Symbol
- -
- Assembly
- GCA_963082995.1
- Location
- OY720296.1:5265978-5273990[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.071 5.4 8.3 4.1 2 23 24 46 23 46 0.95 2 20 0.089 6.8 8.0 2.7 1 22 115 136 115 138 0.90 3 20 0.5 38 5.6 0.1 2 23 168 190 167 190 0.95 4 20 0.41 31 5.9 4.9 2 23 213 234 212 234 0.97 5 20 0.0037 0.28 12.3 0.1 1 23 238 260 238 260 0.97 6 20 0.099 7.6 7.8 3.3 1 23 265 288 265 288 0.93 7 20 0.049 3.7 8.8 0.9 2 23 296 318 295 318 0.93 8 20 0.00013 0.01 16.9 0.9 2 23 326 348 325 348 0.96 9 20 0.0014 0.11 13.6 2.1 1 23 354 376 354 376 0.95 10 20 3e-07 2.3e-05 25.2 2.2 1 23 382 404 382 404 0.99 11 20 0.00028 0.021 15.9 0.8 1 21 410 430 410 431 0.96 12 20 0.28 21 6.4 0.0 2 23 557 579 556 579 0.93 13 20 2.1 1.6e+02 3.6 6.6 2 23 602 623 601 623 0.96 14 20 0.0025 0.19 12.9 0.9 1 23 627 649 627 649 0.98 15 20 9.4 7.2e+02 1.6 3.3 1 19 654 672 654 677 0.80 16 20 0.085 6.5 8.0 0.4 2 23 686 708 686 708 0.93 17 20 0.00011 0.0081 17.2 2.2 1 23 715 738 715 738 0.98 18 20 0.0016 0.12 13.5 5.4 1 23 744 766 744 766 0.98 19 20 2.7e-07 2.1e-05 25.3 1.1 1 23 772 794 772 794 0.99 20 20 0.11 8.5 7.7 6.9 1 23 800 823 800 823 0.94
Sequence Information
- Coding Sequence
- ATGTTTAAAAATCATCAGAAGAGGGATGATCATGTGGCTGAAGTGCATGGGGTACAAAGTAACCTGATTAAATGTCGTGCTTGCGATAAGACCTTTACTTGCAAAAGATCTCTGACTATTCATACTAAGAGGGATCATTTGATTGAGCGCAAGCACAAATGTATCATCAAATTAAAGAAAGAACCTGAACCAAAACCAAATAAACCGACAGCCAAGCCAAAGACGCCCGCTGGTAAAACAAAGCCATCTGTAAGAGAAGAACTAGAAAAGCAATCGAATAACACGCAAATGATTATAATGTGCAGCAATGCGACCCCTTTCCTTCAAAAGATAGACACGGGGTACGTCTGTTGTTACTGCAGGGAACAATATCAGGACCCTGCCGATCTAAAGAAGCATAACCATGAAATTCATGGAGACAAATATGACCCAGTATCTCCTAACGTTATTATGAACAGCAGGAAATCTGAATTCTGCATCAAATTAGACATTACAGGCTTACAATGTACACTCTGCAGCACAGACATTCCGTCTTTGGAGGCACTTAAAGATCACCTCCAAAATGAGCACAAAAAGAAGATATTTACGGATATCAAGAATAAGATCATACCATTCAAGTTCGAAAGTGAAGATATCCGCTGTTGCATTTGTTCCAACGTATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTACAGGAACTTTGTTTGCGAGCAGTGCGATCTAGGTTTCGTGACCTTATTAAGTCTAAAAAGTCATGCAGAAAAACACAAATTAGGCGAATTCAAATGCCAGTATTGCCCCAAGATATATGATACACATCGAAAGAGAAAGTCGCACGAAAAAGCAGTGCATGTAACGGGATATTTGTTGAGCAGATGCGGGTACTGCAACGAACGATTCACGAGTACCAAAAACAAGGATGAACATTTAGCCAAAGTTCACGGCGTTCAGTTACGTACACTCAAATGCCAAGCATGTGACAGAACTTTCGAGAACAAAAGAGCTTTGACAATACACACGAGGAGAGATCACTTGATGGAAAGAAAACACAAATGCTCCCAATGTGAAATGTCATTCTTCAACGCCAGTAGTTTAAAAATGCACGCAGTCAAGCATTCAGGCTTGAAGGAGTTTCAATGTGACGTATGTCAGAAGTCTTACGCTCAGAAGAAGACTTTGACGCAGCATATGAGGACACATTCAGATGAGAGACGCTTTAAGTGCGATCGCTGCGAGCAGGCATTCGTAAAGAAGAATAGTTTGAATACACATATGAAGAGTAACCAAGAAACAGTGAGCAAGAAAATTGAAATCAAACCTTTAGAGCCAGCTGTTTTAGTTATCGTAGGACCTGAAAGAAAAACCAAATTGCAGGTAAATGCTACGCCCAAACTGCACGTCGGACCGCATGTCAGTGAGTTGGGGAAACATCGCCACAACCTCGGACAAATTTTACAATATACTAACGCAACACCAATAATGCGTCGTGGGGGCGTTGGATACATGTGCAGTTACTTTTTTCAAGAGCTCCCAGAGCCTGCAGACCTAAAAAAGCATACACTAGCAAAACACACGTCTAAAACAGACCCTACAATTAGGTACGCTAAAAGTCCAGGCATATCAGAATATAATGTCAAAATAGACATCACTAACCTCGAGTGCACAGAATGTGCTAAAGCCATAGACAGTCTAGAAGATCTATTGACCCATCTGCAAGATGAGCATAAAAAAatgatatacactgacattccAAATCATTTCATTCCTTTCAAATTTCTAACAGAAGAACTTACTTGCTGCCTATGTCAGAGTACTTTCGACAAGTTTAAAAAACTTCAAGAGCATATGCACTCACACTACAGGAACTACGTATGTGAAGAATGCGATTCTGGGTTCGTTACTCGGGGATGTTGGCTCAGACATCGCAGCACACACTTAAAAGGAGACTTTCCTTGCAGCTTCTGTCCGAAGGTCTACGATACCATGTTGAAGAAGCGGTCTCATAAGAGATGTAGCCATATTCACGCCGATATGCTTCCCAATAGATGCGCATTTTGCAACAAAGGCTTTAAAGAGTACTATGATAAGGAAATCCACATGTCTGAAGTCCACGGTGCTAAAGCATCACTGTATAAATGTAATGCTTGCGACAGGAGTTATAAAAGCAAGCGTAAATTGAGAATCCACGTCAAAAGAGACCATCTGTTAGAGAGGAGGCACAAATGTCTGACTTGTGACATGACATTCTTTTCTTCCCATGATGTTAAGAAGCATATGATCACACACACGGGGGAAAGGAACTTTCAATGCGAAATTTGTCTGAAATCTTTTGGGAGAAAATCGACGCTTCAAAGTCATATGAGAATCCATAACAATGATCGACGATTTAAATGTGAATTTTGCGGGTTGTCGTTTATTCAAAAGTGTAGCTGGAAAAGCCATTGCAAGACTACGCATGGACAGATAGTTTGA
- Protein Sequence
- MFKNHQKRDDHVAEVHGVQSNLIKCRACDKTFTCKRSLTIHTKRDHLIERKHKCIIKLKKEPEPKPNKPTAKPKTPAGKTKPSVREELEKQSNNTQMIIMCSNATPFLQKIDTGYVCCYCREQYQDPADLKKHNHEIHGDKYDPVSPNVIMNSRKSEFCIKLDITGLQCTLCSTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFESEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLLSLKSHAEKHKLGEFKCQYCPKIYDTHRKRKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRTLKCQACDRTFENKRALTIHTRRDHLMERKHKCSQCEMSFFNASSLKMHAVKHSGLKEFQCDVCQKSYAQKKTLTQHMRTHSDERRFKCDRCEQAFVKKNSLNTHMKSNQETVSKKIEIKPLEPAVLVIVGPERKTKLQVNATPKLHVGPHVSELGKHRHNLGQILQYTNATPIMRRGGVGYMCSYFFQELPEPADLKKHTLAKHTSKTDPTIRYAKSPGISEYNVKIDITNLECTECAKAIDSLEDLLTHLQDEHKKMIYTDIPNHFIPFKFLTEELTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTRGCWLRHRSTHLKGDFPCSFCPKVYDTMLKKRSHKRCSHIHADMLPNRCAFCNKGFKEYYDKEIHMSEVHGAKASLYKCNACDRSYKSKRKLRIHVKRDHLLERRHKCLTCDMTFFSSHDVKKHMITHTGERNFQCEICLKSFGRKSTLQSHMRIHNNDRRFKCEFCGLSFIQKCSWKSHCKTTHGQIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00301425;
- 90% Identity
- iTF_00301425; iTF_01064893; iTF_01535165;
- 80% Identity
- -