Cleu026390.1
Basic Information
- Insect
- Cerastis leucographa
- Gene Symbol
- -
- Assembly
- GCA_963082945.1
- Location
- OY720375.1:6526866-6529980[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.017 1.9 10.3 1.2 1 23 19 42 19 42 0.92 2 20 0.35 39 6.2 0.1 2 23 72 94 71 94 0.95 3 20 0.37 41 6.1 4.9 2 23 117 138 116 138 0.97 4 20 0.00056 0.063 15.0 0.2 1 23 142 164 142 164 0.97 5 20 0.059 6.7 8.6 2.0 1 23 169 192 169 192 0.92 6 20 0.044 4.9 9.0 0.9 2 23 200 222 199 222 0.93 7 20 0.00042 0.047 15.4 0.9 2 23 230 252 229 252 0.96 8 20 0.0014 0.16 13.7 1.8 1 23 258 280 258 280 0.95 9 20 2.6e-07 3e-05 25.4 2.5 1 23 286 308 286 308 0.99 10 20 5.1e-05 0.0058 18.2 0.8 1 21 314 334 314 335 0.96 11 20 0.0016 0.18 13.5 0.2 1 23 409 432 409 432 0.93 12 20 0.65 73 5.3 0.1 2 23 461 483 460 483 0.93 13 20 1.9 2.2e+02 3.8 6.6 2 23 506 527 505 527 0.96 14 20 0.00084 0.095 14.4 0.1 1 23 531 553 531 553 0.98 15 20 6.4 7.3e+02 2.2 2.6 1 14 558 571 558 581 0.78 16 20 0.017 1.9 10.3 0.5 2 23 590 612 590 612 0.94 17 20 0.00043 0.049 15.3 2.4 1 23 619 642 619 642 0.97 18 20 6.5e-05 0.0074 17.9 4.2 1 23 648 670 648 670 0.98 19 20 2.7e-07 3e-05 25.4 1.4 1 23 676 698 676 698 0.99 20 20 0.079 8.9 8.2 7.0 1 23 704 727 704 727 0.94
Sequence Information
- Coding Sequence
- ATGATTATAATGTGCAGTAACGCGACCCCTTTCCTCCAAAAGATAGACACGGGCTACGTCTGTTGTTACTGCAGGGAACAATATCAGGACCCTGCCGATCTAAAGAAGCATAACCAAGAAATTCATGGAGACAAATATGACCCAGTATCTCCAAACGTTATTATGAACAGCAGAAAATCTGAATTCTGCATCAAATTAGACATTACTGGCTTACAATGTAAACTTTGCAGCACAGACATTCCGTCTTTAGAGGCACTTAAAGATCATCTCCAAAATGAGCACAAAAAGAAGATATTTACGGATATCAAGAATAAGATCATACCATTCAAGTTCGAAAGTGAAGATATTCGCTGCTGCATTTGTTCCAACGTATTTGAAAAGTTTCGAAAATTACAGGAACATATGCATTCACATTACAGGAATTTTGTTTGCGAGCAGTGCGATCTAGGTTTCGTGACCCTTACTAGTCTAAAAAGTCATGCAGAAAAACACAAATTAGGCGAATTCAAATGCCAGTATTGCCCCAAAATATATGATACATATCGAAAGAAAAAATCGCACGAAAAAGCGGTGCATGTAACGGGATATTTGTTGAGCAGATGTGGGTACTGTAATGAACGATTCACGAGTACCAAAAACAAGGATGAACATTTAGCCAAAGTTCACGGCGTTCAGTTACGTGCTCTCAAATGTCAAGCTTGTGAAAGAACTTTCGAGAACAAAAGAGCTTTGACAATACACACGAGGAGAGACCACTTGATGGAAAGAAAACATAAATGCTCCCTTTGCGAAATGTCATTCTTCAACGCTAGTAGTTTGAAAATGCATGCAGTCAAGCATTCCGGCTTGAAGGAGTTTCAATGTGATGTATGTCAGAAGTCTTACGCTCAAAAGAAGACTTTGAAGCAGCATATGAGGACACATTCAGATGAGAGACCTTTTAAGTGCGAACGCTGCGAGCAGGCATTCGTGAAGAAGAGTAGTTTGAATACACATATGAAGAGTAACCAAGAAAAAGTGAGCAAGCAAATTGAAATCAAAACTTTAGAGCCAGCTGTATTAGTAATCGTAGGACCTGGCAAGAAAACCAAATTGCAGGTAAATACTACGCCCAAACCGCACATCGAACCGCAAGTCACTGAGTTGGCGAAACATCGCCACAACCTCAGACAAATCTTACAATGTAGTAACGCTACACCAATAATGCGTCGCGGAGGCGTTGGATATATGTGCAGTTACTGTTTTAAAGAGTTCCCAGAGCCTGTAGACCTAAAAGAGCATACACTAGCAAATCACACGTGTAAAACAGACCCTACAACTAAGTACGATAAAAGCCCAGGCATATCAGAATACAGTGTCAAAATAGACATCACCGACCTCGAGTGCACGGAATGTGCTACAACAATAGACAGTCTAGAAGATCTATTGACCCATCTGCAAGACaagcataaaaaaatgttatacacTAACATTCCAAATCATTTCATACCTTTCAAATTCCTAACAGATGATTTAACTTGCTGCCTATGTCAGAGTACTTTCGACAAGTTTAAAAAACTGCAAGAGCATATGCATTCACACTACAGGAACTACGTTTGTGAAGAATGCGATTCTGGGTTCGTTACTCGGGGATCTTGGATCAGACATCGCAGCATACACTTAAAAGGAGACTTCCCTTGCAGCTTCTGTCCAAAGGTCTACGACACGATGTTGAAGAAGCGGTCTCACGAGAGATGTAGGCATATTAACGCCGATATACTTCCCAATAGATGTCCATTCTGCAAAAAAGGGTTTAAAGAGTACTATGACAAGGAAATTCACATGTCTGAAGTCCACGGTGTTAAAACATCACTATACAAATGTAACGCTTGCGATAGGAGTTATAAAAGCAAGCGTAGACTAAGGACCCACGTTCAAAGGGACCATCTGTTAGAGAGGAGACACAAATGTCTGACTTGTGACAAGACATTCTTTTCTTCCTACGATGTTAAGAAACATATGATCACACACACTGGGGAAAGAAACTTTAAATGCGAAATATGTCTTAAATCTTTTGGGAGAAAATCCACTCTTCAAAGTCATATGAGAATTCATAACAATGATCGACGATTTAAATGTGAATTTTGTGGGATGTCGTTTATTCAGAAGTGTAGCTGGAAAAGCCATTGTAAGACCACGCATGGACAAATGATTTAA
- Protein Sequence
- MIIMCSNATPFLQKIDTGYVCCYCREQYQDPADLKKHNQEIHGDKYDPVSPNVIMNSRKSEFCIKLDITGLQCKLCSTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFESEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLTSLKSHAEKHKLGEFKCQYCPKIYDTYRKKKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRALKCQACERTFENKRALTIHTRRDHLMERKHKCSLCEMSFFNASSLKMHAVKHSGLKEFQCDVCQKSYAQKKTLKQHMRTHSDERPFKCERCEQAFVKKSSLNTHMKSNQEKVSKQIEIKTLEPAVLVIVGPGKKTKLQVNTTPKPHIEPQVTELAKHRHNLRQILQCSNATPIMRRGGVGYMCSYCFKEFPEPVDLKEHTLANHTCKTDPTTKYDKSPGISEYSVKIDITDLECTECATTIDSLEDLLTHLQDKHKKMLYTNIPNHFIPFKFLTDDLTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTRGSWIRHRSIHLKGDFPCSFCPKVYDTMLKKRSHERCRHINADILPNRCPFCKKGFKEYYDKEIHMSEVHGVKTSLYKCNACDRSYKSKRRLRTHVQRDHLLERRHKCLTCDKTFFSSYDVKKHMITHTGERNFKCEICLKSFGRKSTLQSHMRIHNNDRRFKCEFCGMSFIQKCSWKSHCKTTHGQMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01062103; iTF_01064893; iTF_01535165;
- 90% Identity
- iTF_01062103;
- 80% Identity
- -