Basic Information

Gene Symbol
stc
Assembly
GCA_941918865.2
Location
CALNXB020000129.1:317664-343948[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.6e+04 -4.6 1.6 15 19 623 627 622 627 0.81
2 14 0.011 1.5e+02 3.1 0.5 2 10 655 663 655 663 0.94
3 14 4.5e-05 0.6 10.7 18.1 4 19 671 686 669 686 0.93
4 14 1.7e-07 0.0022 18.5 10.3 1 18 722 739 722 740 0.98
5 14 1.1 1.5e+04 -3.3 0.4 13 17 764 770 763 771 0.68
6 14 0.0013 17 6.1 16.0 1 19 781 799 781 799 0.98
7 14 2.2e-05 0.29 11.8 12.7 1 19 840 862 840 862 0.87
8 14 0.004 54 4.5 7.4 1 11 902 912 902 913 0.95
9 14 0.052 6.9e+02 1.0 0.3 4 10 917 923 916 924 0.93
10 14 7.4e-06 0.098 13.2 15.0 3 19 931 947 929 947 0.92
11 14 2 2.6e+04 -5.9 3.5 14 18 979 986 976 987 0.64
12 14 0.00048 6.3 7.5 9.6 10 18 994 1002 991 1003 0.92
13 14 4.8e-08 0.00064 20.2 13.7 1 17 1039 1057 1039 1062 0.86
14 14 0.0017 23 5.7 10.5 1 16 1069 1086 1069 1092 0.74

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACACATACGCATACAATAACCAGTACCAAGCTTGGAACGGCGACCCAAATGTCCAATATGTCAACCAAGCCTACTTCCCCAACAGACCAGAGCAACCCAACCAGTATGTGAGCTTTAATGAGTTTCTTTCTCAGATGCAAAACAGTGGTGCACCCAACGCTAACAACTATAGCAATGTTCAATATGAAAACTATCCTGCAAGACAATATAATTATCAGAATGTACCTTCCAGTGCTCAAAATCCCCAGTTAGACAGTTATGGTTATACAGCAACCACAGCCAACATGTCCAGTGGCACAGAAGCATACCCTATGAATGTTCAAAGTCAATACAACCCAGTGGCACCCAATTCTAGTGCCTACACTAATGCAATGATACTCAAATCTAATCTTACTCCAACAGCTACTGAATTTGTGCCAAAAGGTTCTATGATGACACCTGCAACTAGCACTCAGAACATTCCTGAATCTAGTACTGTACAAGATGATAGTGAATCTACAAATAATTATAGTAATGTAAATGAACCTAACCATTACAGTATGAATGATTCACGAAACAATTACCTTAGTAAAAATGAACCTCAAAATACTAGTGGTAGTTCATCAGACACCAACTGGAGAGAAAGATCGCAGAGCTCACAACAAAACACTGAAACAAACCAGAAAACTGAATCATACCAACGTCCACAAGAGCACCCTAGGAGCCAAGAAACAAATGGTCGCCACCGTGATAAAAATTATCGGAATAACGAATCTAATGGGCGACATGATGACTCAAACAACCGCAATCAAGAATCAAGCAACCGTAATCAGGAATCAAACAATCATAATCAAGAGCCAGATAGTAGACAGTGTGAACCAAGTAGTCGCCAACAGGACTCCAGTAGCCGTAACTATGAAACTAATAACCGAAACTATGATTCAAGTAACAAAAGAGGCCAAGGAAAAGGTAATTTTAAGTCAAAGAATAAAGATGATGCTCGTACCTTCTACAACAGTGCAATTAGTAAAGACAGTCAGGATGTGAGAAATGGGAGGGGAGAAGCTTCAGGTCGTGGGAAGAATTGGGTTGGAACTCCACGGCTTAGAGCAATGGAACGCAATAGCACTGAAGATGAACAATATGCCAATACTTATTTACAAGGCAGAGAAGAGAGGGATAATAGAGACAGGGAAAGTGAAAACCGGGAGAGAGACAGGGATAGAGAGAGAGACACCCGTGATAAGCATAGAGACACCCGAGAAACTCATGAAAGGGATAGAGATTACCAAGATGTCCGTGAGACAGACAGAGAAAACCGAGATATTCGCGAGAGAGACAAAAGTAACCGCGACATCCGTGAAAAAGATAGAGATAGCAGAGATTTCCGTGAAAGGGGTAGAGATTACCGAGAGAGGGATAGGGACAACAGAGACATCCGTGAAAGGGATAGAGATTACCGCGACGTTCGTGAGAGGGACAGGGACAACAGAGATATCCGTGAAATAGATAGAGATTACCGTGATTCCCGTGATACAGATAGAAATAATCGTGAAAGGGACAGAGGGAACCGAGATATTCGCGAACGGGACAGAGATACTAGAGAGAGGGAGAGAGCAATAAAGTCTGAGAATGTTGCCAGTCCTACTCGAAACAAAACTAAATATGGCACTGATCAAGTAAACAAAGAGATGACCCAACGTGAGCGTTTAACGGAACAACTAGACAAGGGTACACTGGAGTGTCTCGTCTGCTGTGACCGAGTCAAACAGTATGACCAGGTCTGGTCGTGCTGCAACTGCTACCATGTCTTACATCTGAGGTGCATCCGGAAGTGGGCAATGAGCAGTATGGTTGAGGGCAAATGGCGCTGCCCAGCCTGCCAGAACACGAACGAAGCCATCCCTACTGAGTACCGCTGCATGTGCGGAGCGATGCGCGCGCCGGAGTACCAGCGCGGCTCCACGGGCGCGCACACCTGCGCCCGCGCCTGCCGCCGCGCGCGCGCCTGCCCGCACCCCTGCACGCTCCTGTGCCACCCCGGGCCCTGCCCGCCCTGCCAGGCCACTGTTGTCAAACATTGCGGTTGCGGTGCGGAAACTCGCTCAGTGCTCTGCAGCAGCAAGTTGCCGCAAGTGTGCGGTCGCGTCTGTGGACGTACCCTACTATGTGGTGTGCATAACTGCGCCAAGGACTGCCATGAGGGACCCTGTGACATATGTGTTGAGACTGTCGAACAAGTATGCTACTGCCCGGCCGGCGCGTCGCGCTCGGTGGCGTGCACGTTGGAGACGGGCTCGTGCCCGAGCTGGTCGTGCGGCGACACGTGCGGGCGCGTGCTGGCGTGCGGCGCGCACGTGTGTCGCGCGCACTGCCACGCGCCGCCCTGCCAGCCGTGCCAGCAGCTGCCGCAGTACGTGCACAGCTGTCCTTGTGGGAACACGCAGTTGGCGAAAGATTCGCGCAAGGCGTGCACGGACCCGATCCCGTTGTGCGGCAACATCTGTGCCAAACCGCTGCCGTGTGGTCCTGCCGGCGATAAACATTTCTGCAAACTTAATTGTCATGAAGGGCCGTGTCCTGAATGTCCCGATAATACTGTGCTGCAGTGCCGCTGCGGGCACTCCAGCCGCGAAGTACCCTGCGCTGAGCTCCCTGAAATGTACAACAATGTGCTGTGCCAAAAGAAGTGCAACAAGAAACTATCGTGCGGACGTCACCGCTGCCGCACGGTGTGCTGTGCCGCGACGTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCGTGCCAGACGCACCGCTGCGAGGAGTTCTGCCACACCGGCCACTGCGCGCCCTGCCCGCGCGTCAGTTTCGACGAGCTAACCTGTGAATGTGGTGCGGAAGTAATCCTGCCCCCCGTCCGCTGCGGAGCTCGGCCCCCGGCCTGCAGCGCGCCGTGTCCGCGCGAGCGGCCCTGCCGCCACCCGCCGCACCACTCCTGCCACTCCGGAGACTGTCCGCCTTGTGTCGTGCTCACTACCAAGCGTTGTCATGGTGATCACGAGGAGAGGAAAACAATACCGTGTTCTCAAGAAGAGTTCTCATGCGGCTTACCGTGCGGAAAGCCGCTGCCATGCGGCAAGCATACCTGTATCAAGACCTGTCACAAGGGACCCTGTGACACTGGCAAATGCACGCAGCCGTGTGCGGAGAAGCGCCCGTCGTGCGGGCACCCGTGCGCCGCCCCGTGCCACGTGGGCGCCGCCAGCGCCTGCCCCAGCCCCGCGCCCTGCCGCCGCCCCGTGCGCGTCACTTGCATCTGCGCGCGCCGCCACGCCGAGCGGCCCTGCTGCGACAATGCCAGGGATTATGCCAAGATGATGAGTGCTCTAGCAGCCACGAAGATGTCAGAAGGCGGAACGGTAGACTTGTCAGATGTACAGCGTCCCGGAAGTATGCTGAAAACTCTCGAATGCGACGACGAATGCCGCGTAGAAGCGCGCACTCGTCAGCTGGCCCTCGCGCTCCAGATCCGCAACCCCGACGTGTCGGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCGCCACGGCCGCGCGCGAGCCCGCCTTCGCGCACCTCGTGCACGACAAGCTCACCGAGCTCGTGCAGCTCGCTAAGAAGTCCAAACAGAAGACCCGAGCGCACTCGTTCCCGTCGATGAACTGGCAGAAGCGCCAGTTCATACACGAGCTGTGCGAGCACTTCGGCTGCGAGAGCGTCGCCTACGATGCCGAGCCCAACAGGAACGTTGTAGCCACTGCTGATAGAGAGAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGGCGCGTGCCCGGCCCGGTGCTGCGCGCGCCGCCCGGCGGGGCCAGCGCCGCGCCCGCGGGGGGCGGGGCCAACACCAGGTACGTACACATGTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGGCGCGTGCTCGGCCCGGTGCTGCGCGCGCCGCCCGGCGGGGCCAGCGCCGCGCCCGCGGGGGGCGGGGCCAACACCAGGTACGTACACATGTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGGCGCGTGCCCGGCCCGGTGCTGCGCGCGCCGCCCGGCGGGGCCAGCGCCGCGCCCGCGGGGGGCGGGGCCAACACCAGGTACGTACACATGTGGAGGTGCTGGCGCGCGAGGCCGGCAAGCGGCGCGTGCTCGGCCCGGTGCTGCGCGCGCCGCCCGGCGGGGCCAGCGCCGCGCCCGCGGGGGGCGGGGCCAACACCAGGTCGGGCTGGGCAACACTCACCTCAACGAACGCATGGGCTGCTCGCAGCCAACCGAAACCGCAGCAGTCTCAGCAACCAGCCGCAGAGAAAATCGACTATTTCGACAACCCGCCCGAAAACTAG
Protein Sequence
MSQWNNTYAYNNQYQAWNGDPNVQYVNQAYFPNRPEQPNQYVSFNEFLSQMQNSGAPNANNYSNVQYENYPARQYNYQNVPSSAQNPQLDSYGYTATTANMSSGTEAYPMNVQSQYNPVAPNSSAYTNAMILKSNLTPTATEFVPKGSMMTPATSTQNIPESSTVQDDSESTNNYSNVNEPNHYSMNDSRNNYLSKNEPQNTSGSSSDTNWRERSQSSQQNTETNQKTESYQRPQEHPRSQETNGRHRDKNYRNNESNGRHDDSNNRNQESSNRNQESNNHNQEPDSRQCEPSSRQQDSSSRNYETNNRNYDSSNKRGQGKGNFKSKNKDDARTFYNSAISKDSQDVRNGRGEASGRGKNWVGTPRLRAMERNSTEDEQYANTYLQGREERDNRDRESENRERDRDRERDTRDKHRDTRETHERDRDYQDVRETDRENRDIRERDKSNRDIREKDRDSRDFRERGRDYRERDRDNRDIRERDRDYRDVRERDRDNRDIREIDRDYRDSRDTDRNNRERDRGNRDIRERDRDTRERERAIKSENVASPTRNKTKYGTDQVNKEMTQRERLTEQLDKGTLECLVCCDRVKQYDQVWSCCNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAMRAPEYQRGSTGAHTCARACRRARACPHPCTLLCHPGPCPPCQATVVKHCGCGAETRSVLCSSKLPQVCGRVCGRTLLCGVHNCAKDCHEGPCDICVETVEQVCYCPAGASRSVACTLETGSCPSWSCGDTCGRVLACGAHVCRAHCHAPPCQPCQQLPQYVHSCPCGNTQLAKDSRKACTDPIPLCGNICAKPLPCGPAGDKHFCKLNCHEGPCPECPDNTVLQCRCGHSSREVPCAELPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFDELTCECGAEVILPPVRCGARPPACSAPCPRERPCRHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCAEKRPSCGHPCAAPCHVGAASACPSPAPCRRPVRVTCICARRHAERPCCDNARDYAKMMSALAATKMSEGGTVDLSDVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRATAAREPAFAHLVHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPGGASAAPAGGGANTRYVHMWRCWRARPASGACSARCCARRPAGPAPRPRGAGPTPGTYTCGGAGARGRQAARARPGAARAARRGQRRARGGRGQHQVRTHVEVLAREAGKRRVLGPVLRAPPGGASAAPAGGGANTRSGWATLTSTNAWAARSQPKPQQSQQPAAEKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2