Basic Information

Gene Symbol
stc
Assembly
GCA_947523025.1
Location
OX383290.1:22605003-22620475[+]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 2.8e+04 -4.5 1.6 15 19 631 635 630 635 0.81
2 14 0.044 6.2e+02 1.2 1.2 2 10 663 671 663 671 0.93
3 14 4.1e-05 0.58 10.9 18.1 4 19 679 694 677 694 0.93
4 14 1.6e-07 0.0022 18.6 10.4 1 18 730 747 730 748 0.98
5 14 0.00026 3.6 8.3 13.8 1 19 789 807 789 807 0.98
6 14 2e-05 0.28 11.9 12.7 1 19 848 870 848 870 0.87
7 14 2 2.8e+04 -5.4 2.2 6 10 900 904 900 904 0.94
8 14 0.0037 52 4.6 7.4 1 11 910 920 910 921 0.95
9 14 0.047 6.7e+02 1.1 0.3 4 10 925 931 924 932 0.93
10 14 6.7e-06 0.095 13.4 15.0 3 19 939 955 937 955 0.92
11 14 0.041 5.8e+02 1.3 17.2 1 18 994 1010 994 1011 0.81
12 14 3.4e-08 0.00048 20.7 13.8 1 17 1047 1065 1047 1071 0.84
13 14 0.00018 2.5 8.9 5.5 1 13 1077 1088 1077 1089 0.95
14 14 0.45 6.3e+03 -2.0 1.3 13 19 1108 1117 1107 1117 0.78

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACACATACGCTTACAACAACCAGTACCAAGCTTGGAACGGTGACCCAAATGTCCAATATGTCAACCAAGCCTACTACCCCAATAGACCAGAGCAAGCCAATCAGTATGTGAGCTTTAATGAGTTTCTTTCTCAAATGCAAAACAGTGGTGCGCCTAGTGCTAGCAACTATAACAATGTGCAATATGAAAACTATCCTGCAAGGCAATATAATTACCAGAATGCACCATCCACTGCTCAAAACCCTCAGTTAGACAGTTATGGATATGCAGCAACCACAGCCAATATGTCCAGTGGCACTGAAGCATATCCAATGAATGTTCAAAGTCAATACAACCCAGTGGCACCCAATCCTAATGCTTATACAAATGCAATGATACTCAAATCTAATCTCACTCCAACAGCTACTGAATTTGTGCCAAAAGGTTCTATGATGACACCTTCAACTAGCACTCAGAACATTCCTGAATCTAGTTCTGTTTATGATGATAGTGAATCTAGAAATAATTATAGTAATGTTAATGAACCTAAGAACCATTACAGTAGTATAAGTGATTCACGAAATAACTACCCTAGTATAAATGAACCACGAAATGCTAGTGGTAGTTCATCAGATACAAACTGGAGAGAAAGATCAAAACAAAAGCAGATTGAGCAAGACAGCTCACAACAAAAGCAGAGCGAGCGAGAGAGCTCACAACAAAATACAGAAGCAAGCCAGAAAACTGAATCATACCAACGTCCTCAAGAGCATTCTAAGAACCAAGAACCAAATGGTCGCCACCGTGATAATAATCATCGCAATAACGAATCTAATGGGCGACACCATGATTCAAATAACCGCAATCAGGAATCAAACAACCGTAATCAAGAATCAAACAATCGTAATCAAGAACTAGATAGCAGACAGTATGAATCAAATAGTCGCCAACAGGATTCTAGCAGTCGTAACTATGAATCTAATAACCGTAACTATGATTCAAGTAACAAAAGAGGCCAAGGAAAAGGAAATTACAAATCAAAGAATAAAGATGATGCTCGCACCTTCTACAACAGTGCAATAAGTAAGGACAGTCAGGATGTGAGGAATGGGAGAGGAGAATCTTCAGGGCGTGGAAAGAATTGGGTTGGAACTCCTCGGCTTCGAGCAATGGATCGCAATAGCACAGAAGATGAACAATATGCCAATACTTATTTACAAGGTAGAGAAGAGAGAATGGAGAGAGATAACAGAGACCGGGATAGTGAAAATCGAGAGAGGGACAGAGATGATTTCCCTATGGAAAGAGATACCCGTGACAAGCATAGAGATAGCCGAGATATCCATGAAAGGGATAGAGATTACAGAGATGTCCGTGAGTCAGACAGAGATAACCGAGACATTCGAGAGAGAGACAGAGGTAATCGAGACATTCGCGAGAGAGACAGAGGTAACCGAGATATCCGTGAGAAGGATAGAGATAGTCGAGATGTCCGCGAAAGAGGAAGAGATTACCGTGAGAGGGACAGAGACAACAGAGACATCCGCGAAAGGGATAGAGATTATCGAGATATCCGTGACATGGACAGAGGTAACCGAGATATTCGTGAAAGAGACAGAGATACTAGAGAGAGGGAGAGAGCAACTAAGTCTGAAAATAATCCCAGTCCTGCTCGAACTAAAACTAAATATGGTAATGATCAAGTAAACAAAGAGATGACCCAACGTGAGCGTCTAACTGAACAACTGGACAAGGGCACACTGGAGTGCCTGGTCTGCTGCGACCGAGTCAAACAGTTTGACCAGGTGTGGTCGTGCTGCAACTGTTACCATGTGCTGCATCTGAGGTGCATCCGGAAGTGGGCCATGAGCAGTATGGTTGAGGGCAAGTGGCGCTGCCCAGCCTGCCAGAACACGAACGAAGCCATCCCTACTGAATACCGCTGTATGTGCGGAGCGATGCGCGCCCCTGAGTACCAGCGTGGCTCCACGGGCGCACACACCTGCGGCCGCGCGTGCCGGCGCCCGCGAGCGTGTCCGCATCCCTGCACGCTACTGTGCCATCCCGGACCGTGCCCGCCGTGCCAGGCTACTGTCGTCAAACATTGTGGTTGCGGTGCAGAAACCCGCTCAGTGCTCTGTAGCAGCAAGTTACCGCAAGTGTGCGGCCGCGTCTGTGGACGTACCCTACTGTGTGGTGTGCATAACTGTGCCAAGGATTGCCACGAGGGTCCCTGTGACATATGTGCTGAAACTGTTGAACAAGTATGCTACTGCCCCGCCGCCAAGTCTCGCTCAGTGACCTGCACAGCCGAGACGGGCACGTGCACCAGCTGGTCGTGCGGCGACACGTGCGGCCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCAATGCCATGCGCCGCCCTGCCAGCCCTGCCAGCTACTGCCGCAGTATGTGCACAGCTGTCCTTGTGGGAATACGCAGCTAGCCAAAGACTCACGCAAGGCCTGCACGGATCCGATCCCGCTGTGTGGCAACATCTGTGCCAAACCGCTGCAGTGCGGCCCCGCCGGAGACAAACATTTCTGCAAACTTAATTGCCATGAAGGACCGTGTCCAGAATGTCCCGATAAAACAGTGCTGCAGTGCCGCTGCGGACACTCAAGCCGCGAGGTGCCCTGCGCCGACCTGCCCGAGATGTACAACAACGTGCTGTGCCAAAAGAAATGCAATAAGAAACTGTCGTGCGGGCGTCACCGCTGCCGCACGGTGTGCTGCGCGGCCACGTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCGTGCCAGACGCACCGCTGCGAGGAGTTCTGTCACACGGGACACTGCGCGCCCTGCCCGCGCGTCAGTTTCGACGAGCTGACCTGTGAATGCGGCGCGCAAGTGCTCCTGCCGCCCGTGCGCTGCGGGGCCCGCGCGCCGGCCTGCAACGCGCCCTGCAGCCGCGCGCGCGCCTGCGGGCACCCGCCGCACCACTCGTGCCACTCCGGGGACTGTCCGCCTTGCGTGGTGCTCACGACCAAGCGCTGCCATGGCGACCATGAGGAGCGAAAAACAATACCGTGTTCCCAAGACGAGTTCTCGTGCGGCCTACCTTGCGGGAAGCCGCTTCCTTGCGGCAAGCATACCTGTATCAAGACTTGTCACAAGGGACCCTGTGACTCTGGCAAATGCAGCCAGCCCTGCACGGAGAAGCGGCCGTCCTGCGGGCACCCGTGCGCGGCGCCGTGCCACGTGGGCGCGAGTGCGGGAGCGGGCGCGGGCGCGGGCGCGGGCGCGGTCGCGGGCGCGGGCGCGGGCGCGTGCCCCAGCGCGGGCCCGTGCCGCCGCGCCGTGCGCGCCACGTGCCCGTGCGGCCGCAGGCATGCCGAGCGGCCCTGCTGCGAGAATGCCCGGGATTTTGCTAAGATGATGAGCGCTCTAGCCGCCACTAAGATGTCGGAAGGTGGCTCAGTAGATCTGTCAGATGTACAGCGCCCCGGCAGTATGCTCAAAACTCTCGAATGCGACGACGAGTGCCGCGTGGAAGCCCGCACCCGTCAGTTGGCCCTCGCCCTTCAGATCCGGAACCCCGACGTGTCGGCCAAGCTCGCACCGCGCTACAGCGAGCACGTGCGCTCCACGGCAGCGCGCGAGCCCGCCTTCGCGCACCAGATACACGACAAGCTAACCGAGCTCGTGCAGCTTGCTAAAAAGTCAAAACAGAAGACCCGAGCGCATTCCTTCCCATCGATGAACTGGCAGAAGCGTCAGTTCATACACGAGCTCTGCGAACACTTCGGCTGTGAGAGCGTCGCCTACGATGCTGAGCCGAATAGGAACGTTGTGGCTACTGCTGACAAAGAAAAGTCGTGGCTGCCAGCCATGAGCGTGCTGGAAGTGCTGGCGCGTGAAGCGGGCAAGCGGCGCGTGCCGGGGCCCGTGCTGCGCGCGCCGCACGCCGCGCCCGGCCCCAGCGCGCACGGGGCCAGCTCCAACACCAAGTACGTACACACTCACCAGGTCACACACTACGCATGA
Protein Sequence
MSQWNNTYAYNNQYQAWNGDPNVQYVNQAYYPNRPEQANQYVSFNEFLSQMQNSGAPSASNYNNVQYENYPARQYNYQNAPSTAQNPQLDSYGYAATTANMSSGTEAYPMNVQSQYNPVAPNPNAYTNAMILKSNLTPTATEFVPKGSMMTPSTSTQNIPESSSVYDDSESRNNYSNVNEPKNHYSSISDSRNNYPSINEPRNASGSSSDTNWRERSKQKQIEQDSSQQKQSERESSQQNTEASQKTESYQRPQEHSKNQEPNGRHRDNNHRNNESNGRHHDSNNRNQESNNRNQESNNRNQELDSRQYESNSRQQDSSSRNYESNNRNYDSSNKRGQGKGNYKSKNKDDARTFYNSAISKDSQDVRNGRGESSGRGKNWVGTPRLRAMDRNSTEDEQYANTYLQGREERMERDNRDRDSENRERDRDDFPMERDTRDKHRDSRDIHERDRDYRDVRESDRDNRDIRERDRGNRDIRERDRGNRDIREKDRDSRDVRERGRDYRERDRDNRDIRERDRDYRDIRDMDRGNRDIRERDRDTRERERATKSENNPSPARTKTKYGNDQVNKEMTQRERLTEQLDKGTLECLVCCDRVKQFDQVWSCCNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNEAIPTEYRCMCGAMRAPEYQRGSTGAHTCGRACRRPRACPHPCTLLCHPGPCPPCQATVVKHCGCGAETRSVLCSSKLPQVCGRVCGRTLLCGVHNCAKDCHEGPCDICAETVEQVCYCPAAKSRSVTCTAETGTCTSWSCGDTCGRVLACGAHVCRAQCHAPPCQPCQLLPQYVHSCPCGNTQLAKDSRKACTDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGPCPECPDKTVLQCRCGHSSREVPCADLPEMYNNVLCQKKCNKKLSCGRHRCRTVCCAATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFDELTCECGAQVLLPPVRCGARAPACNAPCSRARACGHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQDEFSCGLPCGKPLPCGKHTCIKTCHKGPCDSGKCSQPCTEKRPSCGHPCAAPCHVGASAGAGAGAGAGAVAGAGAGACPSAGPCRRAVRATCPCGRRHAERPCCENARDFAKMMSALAATKMSEGGSVDLSDVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRSTAAREPAFAHQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPHAAPGPSAHGASSNTKYVHTHQVTHYA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01534476;
90% Identity
iTF_00375944;
80% Identity
-