Basic Information

Gene Symbol
stc
Assembly
GCA_963082945.1
Location
OY720354.1:4969777-4993004[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 4.3e+04 -4.5 1.6 15 19 620 624 619 624 0.81
2 15 0.044 9.5e+02 1.2 1.2 2 10 652 660 652 660 0.93
3 15 4.1e-05 0.89 10.9 18.1 4 19 668 683 666 683 0.93
4 15 1.2e-07 0.0026 19.0 10.0 1 18 719 736 719 737 0.97
5 15 2 4.3e+04 -4.1 2.4 7 11 741 745 741 746 0.89
6 15 0.0012 25 6.2 16.0 1 19 778 796 778 796 0.98
7 15 2e-05 0.43 11.9 12.7 1 19 837 859 837 859 0.87
8 15 2 4.3e+04 -5.4 2.2 6 10 889 893 889 893 0.94
9 15 0.0042 90 4.5 8.0 1 12 899 910 899 910 0.94
10 15 0.048 1e+03 1.1 0.3 4 10 914 920 913 921 0.93
11 15 6.8e-06 0.15 13.4 15.0 3 19 928 944 926 944 0.92
12 15 2 4.3e+04 -6.1 4.2 14 16 976 978 972 984 0.52
13 15 0.00044 9.4 7.6 9.6 10 18 991 999 988 1000 0.92
14 15 4.6e-08 0.00098 20.3 13.8 1 17 1036 1054 1036 1059 0.86
15 15 0.0018 38 5.7 10.1 1 19 1066 1083 1066 1089 0.81

Sequence Information

Coding Sequence
ATGTCTCAGTGGAACAACACATACGCTTACAATAACCAGTACCAAGGTTGGAACGGCGACCCAAATGTCCAATATGTCAACCAATCTTACTACCCCAACAGACAAGAGCAACCCAACCAGTATGTGAGCTTTAATGAGTTTCTTTCTCAAATGCAAAACAGTGGTACACCCAATGCTAACAACTATAGCAATGTGCAATATGAAAACTATCCTGCAAGACAATATAATTACCAGAATGTACCTTCCAGTGCTCAAAACCCCCAGTTAGACAGTTATGGTTATTCAGCAACCACAGCCAATGTGTCCAGTGGCACAGAAGCATACCCAATGAATGTTCAAAGTCAATACAACCCAGTGGCACCCAATCCTAATGCTTATACTAATGCAATGATACTCAAATCTAATCTCACTCCAACAGCTACTGAATTTGTGCCAAAAGGTTCCATGATGACACCTACAACAAGCACTCAGAACATTCCTGAATCTAGTACTGCACAAGATGATAGTGAATCTAGAAATAATTATAGTAATGTAAATGAACCTAAGAACCATTACAGTATGAATGATTCACGAAACAACTACCCTAGTACAAACGAACCACGAAATGCTAGTGGTACTTCATCAGCCACCAACTGGAGAGAAAGATCGCAGAGCTCACAACAAAACACTGAAACAAGCCAGAAAACTGAATCGTACCAATGTCCACAAGAGCACCCTAAAAGCCAAGAAACAAATGGTCGCCACCGTGataaaaattatcgcaataatGAATCTAATGGGCGCCATGATGACTCAAACAACCGCAATCAGGAATCAAGCAACCGTAATCAAGAATCAAACAATCGAAATCAAGAGCCAGATAGTAGACAGTTTGAATCAAGTACTCGCCAACAGGACTCTAGCAGTCGTAACTATGAATCTAACAACCGAAACTATGATTCAAGTAACAAAAAAGGCCAAGGAAAAGGTAATTACAAGTTAAAGAATAAAGATGATGCTCGTACCTTTTACAACAGTGCAATTACTAAAGACAGTCAGGATGTGAGGAATGGGAGAGGAGAAGCTTCAGGTCGTGGAAAGAATTGGGTCGGAACTCCCCGGCTTAGAGCAATGGAACGCAATAGCACTGAAGATGAACAATATGCCAATACTTATTTACAAGGCAGAGAAGAGAGGGATAATAGAGACAGGGAAAGTGAAAACCGGGAGAGGGATAGAGAGAGAGATACCCGTGATAAACAGAGAGACAGCCGAGATACTCATGAACGGGATAGGGATTACCGAGATGTCCGTGACATAGATAGAGACAACCGAGATATTCGCGAGAGAGACAGAGGTAACCGCGACATTCGTGAAAAAGATAGAGAATTCCGGGAAAGGGGTAGAGATTACCGAGACAGGGACAACAGAGACATACGTGAAAGGGATAGAGATTACCGTGACATtcgtgagagggagagggacAACAGGGATATCCGTGAAATAGATAGAGATTTCCGTGATTCCCGTGACTCGGACAGAGATAATCGTGATACTCGCGAAAGAGACAGAGGTAACCGAGATATTCGCGAAAGGGACAGAGATACTAGAGAAAGGGAGAGGGCAATAAAGTCAGAGAATGTTCCTAGTCCTGCTCGAAACAAAACTAAATATGGGACAGATCAAGTAAACAAAGAGATGACCCAACGCGAGCGTCTCATGGAACAATTAGACAAGGGTACACTGGAGTGTCTCGTCTGCTGTGACAGAGTCAAACAGTTTGACCAGGTGTGGTCTTGCTGCAACTGCTACCATGTTCTACATCTGCGGTGCATCCGGAAGTGGGCTATGAGCAGTATGGTTGAGGGCAAATGGCGCTGCCCAGCCTGCCAGAACACGAACGAAACCATCCCTACGGAGTACCGCTGCATGTGTGGAGCGGTGCGCGCGCCGGAGTACCAGCGCGGCTCCACAGGCGCGCACACGTGCGGCCGCGCTTGCcgccgcgcgcgcgcctgcCCGCACCCCTGCACGCTGCTGTGCCACCCCGGGCCCTGCCCGCCCTGCCAGGCCACTGTTATCAAACCTTGCGGTTGCGGTGCGGAAACCCGGTCAGTGCTCTGCAGCAGCAAGTTGCCGCAAGTGTGCGGCCGCGTCTGTGGACGTACCCTACTGTGTGGTGTGCATAACTGTGCCAAGGACTGCCACGACGGACCCTGTGACATCTGTGATAAGACTGTCGAACAAGTATGCCACTGCCCGGCCGCCGTGTCGCGCGCGGTGGCGTGCACGGCGGACACGGGCGCGTGCAGCTCGTGGTCGTGCGGCGACTCGTGCGGGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCACTGCCACGCGCCGCCCTGCCAGCCCTGCCAGCTGCTGCCGCAGTACGTGCACAGCTGTCCTTGTGGGAACACGCAGTTGGCGAAAGACTCGCGCGCGGCGTGCACGGACCCGATCCCGTTGTGCGGCAACATCTGTGCCAAACCGCTGCAGTGCGGCCCCGCTGGAGACAAACATTTCTGCAAACTTAATTGTCATGAAGGCCCGTGTCCCGAATGTCCCGATAAGACAGTGCTGCAGTGCCGCTGCGGTCACTCCAGCCGCGAAGTACCCTGCGCTGATCTCCCAGAAATGTACAACAATGTGCTGTGCCAAAAGAAGTGCAACAAGAAACTGTCGTGCGGGCGTCACCGCTGCCGCACGGTGTGCTGCTCCGCGACGTCGCACCGCTGCGCCGTGGTGTGCGGCCGCACGCTGTCGTGCCAGACGCACCGCTGCGAGGAGTTCTGCCACACCGGCCACTGCGCGCCCTGCCCGCGCGTCAGTTTCGACGAGCTCACTTGTGAATGTGGTGCGGAAGTAATCCTGCCCCCCGTCCGCTGTGGAGCCCGGCCTCCCCCCTGCAGCGCGCCATGTCCGCGCGAACGACCCTGCCGCCACCCGCCGCACCACTCCTGCCACTCCGGGGACTGTCCGCCTTGTGTCGTGCTCACTACCAAGCGTTGTCATGGTGATCACGAGGAAAGAAAAACCATACCTTGCTCTCAAGAAGAGTTCTCATGCGGCCTTCCATGCGGAAAGCCGCTGCCATGTGGCAAGCATACCTGTATTAAGACCTGTCACAAAGGACCCTGTGACACTGGCAAATGCACGCAGCCGTGCGCGGAGAAGCGTCCGTCGTGCGGTCACGGCTGCGCGGCGGCGTGCCACGCGGGCGCCGCGACCCCGTGCCCCAGCGCCGCGCCGTGCCGCCGCGCCGTGCGCGCCACGTGCGCGTGCGGCCGGCGACACGCCGAGCGGCCCTGCTGCGACAACGCTAGGGATTACGCCAAGATGATGAGCGCTCTAGCCGCCACTAAAATGTCAGAAGGTGGTTCAGTAGACCTGTCAGATGTGCAGCGCCCCGGCAGTATGCTGAAAACTCTAGAATGCGACGACGAATGCCGCGTAGAAGCCCGCACCCGTCAGCTCGCCCTCGCCCTGCAGATCCGCAACCCCGACGTGTCGGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCAGCACGGCCGCGCGCGAGCCCGCCTTCGCGCACCAGATACACGACAAGCTCACCGAGCTCGTGCAGCTCGCTAAGAAGTCCAAACAGAAGACGCGAGCGCACTCGTTCCCGTCGATGAACTGGCAGAAGCGCCAGTTCATACACGAGCTGTGCGAACACTTCGGCTGCGAGAGTGTCGCCTACGACGCTGAGCCCAACAGGAACGTTGTCGCCACTGCTGATAGAGAGAAGTCGTGGCTGCCGGCCATGAGCGTGCTGGAGGTGCTGGCGCGCGAGGCGGGCAAGCGGCGCGTGCCGGGGCCCGTGCTGCGCGCGCCGGGGCCCGTGCTGCGCGCGCCCGCGCCCGGCCTGCACGCTGCCAGTGCCAGCGCCGCCAACGTCAAATCGGGCTGGGCAACACTTACCTCAACGAACGCATGGGCCGCTCGCAGCCAACCGAAACCTCAGCAGTCTCAGCAACCGCAACAACCAGCCGCAGAGAAAATCGACTATTTCGACAACCCGCCCGACAACTAG
Protein Sequence
MSQWNNTYAYNNQYQGWNGDPNVQYVNQSYYPNRQEQPNQYVSFNEFLSQMQNSGTPNANNYSNVQYENYPARQYNYQNVPSSAQNPQLDSYGYSATTANVSSGTEAYPMNVQSQYNPVAPNPNAYTNAMILKSNLTPTATEFVPKGSMMTPTTSTQNIPESSTAQDDSESRNNYSNVNEPKNHYSMNDSRNNYPSTNEPRNASGTSSATNWRERSQSSQQNTETSQKTESYQCPQEHPKSQETNGRHRDKNYRNNESNGRHDDSNNRNQESSNRNQESNNRNQEPDSRQFESSTRQQDSSSRNYESNNRNYDSSNKKGQGKGNYKLKNKDDARTFYNSAITKDSQDVRNGRGEASGRGKNWVGTPRLRAMERNSTEDEQYANTYLQGREERDNRDRESENRERDRERDTRDKQRDSRDTHERDRDYRDVRDIDRDNRDIRERDRGNRDIREKDREFRERGRDYRDRDNRDIRERDRDYRDIRERERDNRDIREIDRDFRDSRDSDRDNRDTRERDRGNRDIRERDRDTRERERAIKSENVPSPARNKTKYGTDQVNKEMTQRERLMEQLDKGTLECLVCCDRVKQFDQVWSCCNCYHVLHLRCIRKWAMSSMVEGKWRCPACQNTNETIPTEYRCMCGAVRAPEYQRGSTGAHTCGRACRRARACPHPCTLLCHPGPCPPCQATVIKPCGCGAETRSVLCSSKLPQVCGRVCGRTLLCGVHNCAKDCHDGPCDICDKTVEQVCHCPAAVSRAVACTADTGACSSWSCGDSCGRVLACGAHVCRAHCHAPPCQPCQLLPQYVHSCPCGNTQLAKDSRAACTDPIPLCGNICAKPLQCGPAGDKHFCKLNCHEGPCPECPDKTVLQCRCGHSSREVPCADLPEMYNNVLCQKKCNKKLSCGRHRCRTVCCSATSHRCAVVCGRTLSCQTHRCEEFCHTGHCAPCPRVSFDELTCECGAEVILPPVRCGARPPPCSAPCPRERPCRHPPHHSCHSGDCPPCVVLTTKRCHGDHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTGKCTQPCAEKRPSCGHGCAAACHAGAATPCPSAAPCRRAVRATCACGRRHAERPCCDNARDYAKMMSALAATKMSEGGSVDLSDVQRPGSMLKTLECDDECRVEARTRQLALALQIRNPDVSAKLAPRYSEHVRSTAAREPAFAHQIHDKLTELVQLAKKSKQKTRAHSFPSMNWQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRAPGPVLRAPAPGLHAASASAANVKSGWATLTSTNAWAARSQPKPQQSQQPQQPAAEKIDYFDNPPDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01534476;
90% Identity
iTF_01085987;
80% Identity
-