Xrho033872.1
Basic Information
- Insect
- Xestia rhomboidea
- Gene Symbol
- Znf711
- Assembly
- GCA_963853795.1
- Location
- OY970786.1:6336534-6340901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.022 2.2 9.9 0.5 1 23 84 107 84 107 0.93 2 20 0.46 47 5.8 0.1 2 23 134 156 133 156 0.94 3 20 0.0012 0.12 13.9 1.4 2 23 179 200 178 200 0.97 4 20 0.00068 0.069 14.7 0.1 1 23 204 226 204 226 0.95 5 20 0.017 1.7 10.3 2.2 1 23 231 254 231 254 0.97 6 20 6.5 6.6e+02 2.1 0.9 2 10 260 268 259 282 0.79 7 20 3.9e-05 0.004 18.6 0.6 2 23 291 313 290 313 0.96 8 20 8.4e-05 0.0086 17.5 1.1 1 23 319 341 319 341 0.98 9 20 0.0077 0.79 11.3 3.3 1 23 347 369 347 369 0.98 10 20 6.2e-05 0.0063 17.9 2.1 1 23 375 398 375 398 0.98 11 20 0.33 33 6.2 0.2 1 23 463 486 463 486 0.91 12 20 6.5 6.7e+02 2.1 0.2 2 23 513 535 512 535 0.90 13 20 0.0002 0.02 16.3 2.7 2 23 558 579 557 579 0.97 14 20 1.5 1.6e+02 4.1 1.1 1 14 583 596 583 605 0.85 15 20 0.0022 0.22 13.1 2.7 1 23 610 633 610 633 0.98 16 20 0.18 19 7.0 2.2 2 23 641 663 640 663 0.94 17 20 1.9e-05 0.002 19.5 0.7 2 23 671 693 670 693 0.96 18 20 0.00057 0.059 14.9 0.6 1 23 699 721 699 721 0.98 19 20 2.6e-05 0.0027 19.1 1.2 1 23 727 749 727 749 0.99 20 20 4.7e-05 0.0048 18.3 4.5 1 23 755 778 755 778 0.98
Sequence Information
- Coding Sequence
- ATGAAGTTGCAATCCGAGATCAAAGAACGACAGATTTTAAAAGCAGAAACAGCACGTACAATATCAAAGATAGttggaaagaaaaatattagcaAAGGCATACCTCAATCAAACTCTGATGAAGAAGGtagtaaaacaaagaaaaagagtCAAAAGCAAAATGAGGAGGAATTGTTTAAACAACGTTACAATATTAGAGAGATACTACTATGTAGCACTGCTACGCCCATTCGTAAGTATGATCTTGGATATGTGTGCTGTTTCTGTGATAACCAATATCCCAATCCCGAGGAACTAAAAACCCATACCATCGCAGAACACGATGACAGTGATAAACTGGACTTCATGAAAGGACAGCGTGCTGTGTACTTCTTAGTCAAGCTAGACATTACCGAACTCAAGTGTACCTTGTGCGACACAGACATAGATTCAGATGTAGACCTCATCCAACATCTGAGGGACGAACATGGTAAGCCAATGTTCACAGATATAAAGAATTATATCTTACCGTTCAAGTTCGGAGACTCAACTCTTAAGTGCACCTTCTGCCCCCGAATATTCAACAGATTTAAAGTTCTGCAAGAGCACATGTACACTcactatagaaattttgtttgtgACGTATGCGGCACTGGTTTCGTTAACGAGAAAATGCTTAACACACATAGTGACAGCCATAAAGTGGGAGTTTTCAAGTGTGGACACTGTCCCGAAGAATTTGACACTCCcagaaaaaagaaatatcacGAAAAGACTGTTCACTTGTTATCTTTGAACAAATGTGGGTATTGTGACGAAAAGTTCATGTGGTACAGACAAAAATGTGCTCACTTAGCTGAAGTACATGGCATTGTAGTTACTCAACCGAAGGAGTGTAAAGCTTGCGACAAAGTATTCTCTTCTGAGTCCAAACTTCAGCTTCATGTTAGGAGGGATCATTTGCTAGAACGTAGATTCAAATGTACTGAATGTGAGATGGAGTTCTTTACCAAAGAGTCTCTAAACGACCACATGGTCAAACACACAGGACACAAAATGTTTTCTTGCAAGGTTTGCTGCAAGTCTTACGGGTTGAAAAAAGCTTTGAGGCAGCACATGAGGATACATGACAATGATAGGAGATTTAAATGCGAGATATGCGATCAGGCGTTCGTGCAAAAGTGCAGCTGGAAAGGGCATATGCGTTCTAAGCATGGTGTTCAACGTAACGTGAACGCCAAGATTGAAACGGATGGTTACAAAAAAGTGACTCGCAAATGTACCCGAAGAAAGCTCAAACAACCTGAGGAGCCCAAAATTAATGAGTTATTAAAACATAGAAGTAATATACGTCTTATATTACAATGTACCAACGCGACACCTATACGATGCAGAGGGGGCATCGGATATGCCTGTTGTTTTTGCGCAGATGAGTTTCCAGATCCTGcagacttaaaaaaacatactCTAGAAGGCCACGATGATAAAACTAAACTCAAATTCATGATTGGCAAAATGATGTTCTCATTCCTTGTCAAATTAGACATCACTGATCTTACGTGCAAAATATGCGAAGACAACATTCATACATTAGAAGATCTCATTGAtcatttaatcaaaatacacgataaaaagatttaCACTGATATTAAGAGCCACATAATGCCTTTTAAGTTCGACAGTGATACACTAAAATGCATGGTTTGCCAACATGCTTTCAACAGATTCAAGAACTTGCAACAACATATGAACATACATTACAGAAATTTTATTTGCGAACATTGTGATGctggatttataaataaacacattcTAGCATGTCACACCGAAGGGCATAAGACTGGTACATTCAAGTGTGATTTATGTACGAAAGTATTTGATACCCAAAGGAAGAAGAAAAGCCACGAAAAAACCGTTCATATCCATGCGAACTTGCTTAGTAAATGCGGATACTGTAGTCAGAAGTTTACGAATTACAAAAAAAGAGATAATCACTTACTAAAAGTACATGGAGTTCAGATTAAAGCTGTCAAATGCAACGCTTGTGACAAGACTTTTGAACAAAAAAGCGCGCTAACAATCCACACGAAACGAGATCACCTGATGGAGAGACGGTACAAATGTGCTCTGTGCGACATGAAATTTTACGGATCTAACGAATTAAAACTCCACATGGTGAAACATACAGGAGTGAGAGAGTTCAAATGCGCCGTCTGTTTAAAGTCATATGGCCGGAAGAAAACATTGAAAGAGCATATGAGGATCCATAACGATGATAGGCGGTTCAAGTGCGAGCACTGCGGTCAGGCATTCGTTCAGAAATGCAGCTGGAAAGGGCACATGAGGACTAGGCATGGCACACTGGTctga
- Protein Sequence
- MKLQSEIKERQILKAETARTISKIVGKKNISKGIPQSNSDEEGSKTKKKSQKQNEEELFKQRYNIREILLCSTATPIRKYDLGYVCCFCDNQYPNPEELKTHTIAEHDDSDKLDFMKGQRAVYFLVKLDITELKCTLCDTDIDSDVDLIQHLRDEHGKPMFTDIKNYILPFKFGDSTLKCTFCPRIFNRFKVLQEHMYTHYRNFVCDVCGTGFVNEKMLNTHSDSHKVGVFKCGHCPEEFDTPRKKKYHEKTVHLLSLNKCGYCDEKFMWYRQKCAHLAEVHGIVVTQPKECKACDKVFSSESKLQLHVRRDHLLERRFKCTECEMEFFTKESLNDHMVKHTGHKMFSCKVCCKSYGLKKALRQHMRIHDNDRRFKCEICDQAFVQKCSWKGHMRSKHGVQRNVNAKIETDGYKKVTRKCTRRKLKQPEEPKINELLKHRSNIRLILQCTNATPIRCRGGIGYACCFCADEFPDPADLKKHTLEGHDDKTKLKFMIGKMMFSFLVKLDITDLTCKICEDNIHTLEDLIDHLIKIHDKKIYTDIKSHIMPFKFDSDTLKCMVCQHAFNRFKNLQQHMNIHYRNFICEHCDAGFINKHILACHTEGHKTGTFKCDLCTKVFDTQRKKKSHEKTVHIHANLLSKCGYCSQKFTNYKKRDNHLLKVHGVQIKAVKCNACDKTFEQKSALTIHTKRDHLMERRYKCALCDMKFYGSNELKLHMVKHTGVREFKCAVCLKSYGRKKTLKEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRTRHGTLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124504;
- 90% Identity
- iTF_01535159;
- 80% Identity
- -