Xash033894.1
Basic Information
- Insect
- Xestia ashworthii
- Gene Symbol
- MBD3
- Assembly
- GCA_950022955.1
- Location
- OX465565.1:13439348-13443202[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.4e-28 2.7e-24 86.1 0.1 1 72 8 74 8 78 0.95 2 2 0.00026 1.6 10.0 0.1 29 73 96 148 81 151 0.87
Sequence Information
- Coding Sequence
- ATGAGTACAATGAATATATCTATAGAGAAGAAAAGATCGGACTGCCCTGCCTTACCCAAAGGTTGGCAAAGGGAAGAAGTTCTCAGGAAAACAGGCTTATCTGCCGGAAAAGTTGATGTTTACTATTACAGCCCAACAGGTAAAAAGTTTCGCAGTAAGGCTGAGCTAGTTCGTTATCTGGGTGATAGTATGGACCTGTCGTGTTTCGACTTTCAGCAGGGTCAGATAAACACAATGCTGCTGTGCAAGGCCAAGAAAGCACGCGCGCAGTTTGACTACAGgGGAGTCCGATCGGATGCGTCTTTGGTACCTCCTATTCGTCAAACGGCGTCAATATTCAAGCAGCCTGTTACTGTCTATAAGACACAGGAAAGCAAGGTGAAAACTGACCTGAAACATGGTACACAAGAGAAACCCAAACAGCTGTTCTGGGAAAAGAGGCTAgaaTACTTTAAGATCATTCCACAGTACTGTTTCTTTATGGAAGTTTTCCTTGAAGTTGTATCCCCACTGCTCTTGAAGTTGTTTGAGATTTAA
- Protein Sequence
- MSTMNISIEKKRSDCPALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKFRSKAELVRYLGDSMDLSCFDFQQGQINTMLLCKAKKARAQFDYRGVRSDASLVPPIRQTASIFKQPVTVYKTQESKVKTDLKHGTQEKPKQLFWEKRLEYFKIIPQYCFFMEVFLEVVSPLLLKLFEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01534854; iTF_00871310; iTF_01561140; iTF_00445205; iTF_01495062; iTF_01099841; iTF_00687892;
- 90% Identity
- iTF_00445205;
- 80% Identity
- -