Basic Information

Insect: Xanthostigma xanthostigma
Gene Symbol: -
Assembly: GCA_963575645.1
Location: OY754474.1:3023956-3033248[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1.2 9.3e+02 0.6 0.0 21 43 632 654 627 660 0.86

2 15 0.034 26 5.5 0.3 21 48 660 686 655 688 0.89

3 15 0.046 35 5.1 0.6 21 43 688 710 686 715 0.89

4 15 0.017 13 6.5 0.1 21 48 716 742 711 747 0.86

5 15 0.094 72 4.1 0.3 21 43 744 766 739 772 0.85

6 15 0.03 23 5.7 0.3 21 45 772 795 766 800 0.87

7 15 0.13 99 3.7 0.1 21 47 800 826 796 832 0.86

8 15 0.045 35 5.2 0.3 22 48 1035 1060 1028 1065 0.84

9 15 0.00058 0.45 11.2 0.4 21 48 1062 1089 1059 1093 0.93

10 15 0.19 1.5e+02 3.1 0.1 18 45 1114 1141 1105 1150 0.84

11 15 0.032 24 5.7 0.5 16 44 1168 1196 1155 1205 0.86

12 15 0.39 3e+02 2.2 0.2 26 44 1206 1224 1200 1228 0.84

13 15 0.003 2.3 8.9 0.5 14 46 1222 1253 1219 1256 0.87

14 15 0.00084 0.64 10.7 0.3 21 49 1257 1284 1254 1288 0.89

15 15 0.056 43 4.9 0.1 21 48 1285 1311 1282 1314 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1.2	9.3e+02	0.6	0.0	21	43	632	654	627	660	0.86
2	15	0.034	26	5.5	0.3	21	48	660	686	655	688	0.89
3	15	0.046	35	5.1	0.6	21	43	688	710	686	715	0.89
4	15	0.017	13	6.5	0.1	21	48	716	742	711	747	0.86
5	15	0.094	72	4.1	0.3	21	43	744	766	739	772	0.85
6	15	0.03	23	5.7	0.3	21	45	772	795	766	800	0.87
7	15	0.13	99	3.7	0.1	21	47	800	826	796	832	0.86
8	15	0.045	35	5.2	0.3	22	48	1035	1060	1028	1065	0.84
9	15	0.00058	0.45	11.2	0.4	21	48	1062	1089	1059	1093	0.93
10	15	0.19	1.5e+02	3.1	0.1	18	45	1114	1141	1105	1150	0.84
11	15	0.032	24	5.7	0.5	16	44	1168	1196	1155	1205	0.86
12	15	0.39	3e+02	2.2	0.2	26	44	1206	1224	1200	1228	0.84
13	15	0.003	2.3	8.9	0.5	14	46	1222	1253	1219	1256	0.87
14	15	0.00084	0.64	10.7	0.3	21	49	1257	1284	1254	1288	0.89
15	15	0.056	43	4.9	0.1	21	48	1285	1311	1282	1314	0.87

Sequence Information

Coding Sequence: ATGATGTCTAAGTTTTATAAATGTTGTGCGGTGCCTCAGTGTGCAAGTAATACAAGCAAAACTCCTGAAAAGCTGTTTATTCACGTTCCACGTTCAAAAGACAGGAAAATTTGGCTTCAACTTGCCCGCAGGGATCCGGCACTTGTAGCTACACaatctaaaatgtatttttgtgaaGATCATTTTGACttacCGACTGATATGGAAAACTATACCGAATATCATTTAATGGGTTCGGTATCTCAAGTCCGAATAAGAGCAGGTTGTTTGCCAAAAAAATTTGGGTGTCAACCTGACAGAAAAAGACGAACAGATAAAAAAACAGCTCGATCATTAGTAATCAAAAGGCAAAGATTAGAAGCAATATCGGAATGTGAAAGAGAAATCGAAGCACGCTCTACACAAAGTATTTCCATGGTTGAAGTTCAACCAGGTCCAAGCTCAGatATCTACGAAACCCGAAAAATGGAACAATTGTGCAGGTTATGTTTGTCATACTTACACGATTTGACTACGACTgctgtatttttgttttcttccgAATCGGGCGAAGAAATAGCGGATATAGTAATGGAATGTGCACCAGTTCAAATTACTAGATACGATAAGATGCCGACCTATATTTGTCTATTATGTTTCGCTGAACTGAAGAAATTTCACCAGTTCCAAATGCAAGTAATACAGTCGGACAAAACATTGCAGCGCCATGTGCAGCAGTTGGCCGATTGTTCTACGCAGATCAAGGTTGAAAGGGACCATGAAGAAGGACCATCCGATAATTCCGTTAGTCAGAACACTGAAACCGATGTCACTACACGATGCGAAGCATTTGAAATAAGTCCTGAGtttgatttttattcaaaacagaCACCACCTGtcaattttaacgcagaaaataGCAATAACGAAGAGATgcttttaaaaactgaaattaaaGATGAACCAATTGATtataattcatttgtttcatcaGAGTCTGCTGAAGAACCAGTTGCAAGTTTATCCAAGGTTGAAGATAGTGAAATCAATTGCGAAGATTCTATGATTACTATAGGTGATACTAAAGTAGATGTAAAGAAGACAGAATTCTTTGAGTATTCctttaaaattgaaaacgaCACGGCGGAGGAAATACCGCTTAAATTGGAAGAAGCAACCAATAAACCACTAGAACAAGTCGATAGTAGCCTAGTTCCCCAAAATTTTAGAACGGATCCATCTGTTGGTATAGGAGAGAAGCAGTACGAATGCGatATTACTAGATACGATAAGATGCCGGCCTATATTTGTCGATTATGTTTCGCTGAACTGAAGAAATTTCACCAGTTCCAAATGCAAGTAATACAGTCGGACAAAACATTGCAGCGCCGTGTGCAGCAGTTGGCCGCTTGTCCTACGCAGATCAAAATTGAAAGGGACCTTGAAGAAGAACCATCTGATAATTTCGTTAGCCAGAACACTGAAACCGATGTCACTACACGATGTGAACCATTTGAAATAAGTCCTGTGtttgatttttattcaaaacagaCGCCACCTGtcaattttaacgcagaaaataGCAATAACGAAGAGATACCTTTAAAAACTGAAATCAAAGAAGAACCGTTGGACTATAATTCACAAATTCCAACAGTGTGTGCTGAGGAGACAGTAGGAAGTTTATCCAAGGTTGAAGATGGTGAAATCAATTGCGAAGATTCTATGATTACCACAAGCGATATTAAAGTAAATGTAAATAAGTCAGAATTCTATGCGTATtcctttaaaattgaaaatgacaCGGCGGAGGAAATACCGAtgaaattggaagaaacgtccAATAAACAACTAGAAGAAGTCGATGGTAGCCTAGTTCCCCAAAATTTAAGAATGGATCCATCTATTGATGGAGAAGAGAAACCGTACAAGTGTGGTGATTGTAAAATGCGTTTCAAACAAGCGGTTTATTTAAAGCGTCATTCATTGAAACATACTGGGGAGAAACcacatcagtgtgacatttgtaaaatgcgTTTTAGACACATAAGGACATTAAAGAACCATGAAttaacacatacaggagagaaaccatatcagtgtgatatttgtcaGATGTGTTTCAGGCAAACgattcacttaaaaaatcataaactaACACATTCTGGAGAGAAACCCTACCAGTGTGATATTTGTCAAATGTCTTTCAGAGAAGCGAGAGTTTTAAAGAGTCATAAATTAAAGCATTCAGGAGAGAAACcgcaccagtgtgacatttgtcagtTGCGTTTTAGACAAACGATtcacttaaaaattcataaactaaaacatacaggtgagaaaccataccagtgtgacatttgcaaAATGCGCTTTAGGCACTCAACTACTTTAAGGATACATGAATTCCagcatacaggagagaaaccataccagtgtgacgtttgtcaaATGGGTTTCAGACAAGCgattcacttaaaaaatcataaaATTACTAGATACGACAATATGCCGGCCTATATTTGTCGATCTTGTTTCGCTGAACTGAAGAAGTTTCACCAGTTCCAAATGCAAGTAATACAGTCGGACAAAACATTGCAGCGCCGTGTGCAGCAGTTGGCCGATTGTCCTACGCAGATCAAGGTTGAAAGGGACGTGGAAGAAGAACCATCTGATGATTCCAAAAGCCAGAACACCAAAACCGATGTTACTACGCGATGTGAACCATTTGAAGttagtaatttttattcaagAGAGACGCCGCCTGTCAATTATAACGCAGAAAATAGTAATTGCGAAGAGATACCTTTAAAAACTGAAATCAAAGAAGAACCGTTGGACTATAATTCACAAATTCCAACAGTGTCTGCTGAGGAGACAGTAGGAAGTTTATCCAAAGTTGAAGATAGTGAAATCAATTGCGAAGATTCTATGATTACCACAGGCGATACTAAATTGGATATAAATAGGACCGAAATCTTTGAGCATTtctttaaaactgaaaatgGCATGGCGGAGGAAATACCGCTTAAATTGGAAGAAACATGCATAAAACCGTTAGAGGAAGCTGATAGTGGCCTATTTCCCGAGAATTTAAGAATGGATCCATCTATTGATACAGAAGACAAACCGTACAAGTGTGACATTTGCCAAATGTGTTTCAGAGAAGCGAGAGTTTTAAAGTGTCATAAACTAaagcatacaggagagaaaccgcaccagtgtgacatttgtaaaatgtgtttcaaacaaccgatttatttaaaacgtcatttattattaaatcacaCAGAAGAGAgacagtgtgacatttgtaaaatgtgtttcacaAACACAACTTCTTTAAATAATCATAAACTAagacatacaggagagaaaccacacctgtgtaaaatttgtaaaatcagTTTTACAGACCCAACAACTTTAAGGAATCATATATCacaacatacaggagagaaaccgtacatGTGTGACAGTTGTCCGCAACGTTTCAAACAATTGGGTCACTTAAAAACCCATAGATTAAGACATGCAGTAGAAAAACAATACCAGTGTGgtatttgtcaaatgtgtttcaaaCAAGCGGGCCAGCTAAAACgtcataaattaatacatacaaaaatgaaacgacatcaatgtgacatttgtcaaatgtgttacAAAGACTCGCGTACTTTAAACAAACACAAATCAATTCACACGGGGGAGAAGCCCTACCAATGCGAGGTTTGTAAAACGTGTTTTAGACAAGTAGCTACTTTAAGGAACCACGAATTAATACATAAAgatgagaaaccgtaccagtgtgatgtTTGTCAAATGTCGTTCAGGCAAGCGAGACACTTGAAAAGTCATGAgttaaaacatacaggagagaaaccctACCAGTGTAAGATATGTAAAATGTCTTTTAGACATTCGAATTCTTTAAAATTACACGAATTTAAGCATACAATGGACACCGAGTGA
Protein Sequence: MMSKFYKCCAVPQCASNTSKTPEKLFIHVPRSKDRKIWLQLARRDPALVATQSKMYFCEDHFDLPTDMENYTEYHLMGSVSQVRIRAGCLPKKFGCQPDRKRRTDKKTARSLVIKRQRLEAISECEREIEARSTQSISMVEVQPGPSSDIYETRKMEQLCRLCLSYLHDLTTTAVFLFSSESGEEIADIVMECAPVQITRYDKMPTYICLLCFAELKKFHQFQMQVIQSDKTLQRHVQQLADCSTQIKVERDHEEGPSDNSVSQNTETDVTTRCEAFEISPEFDFYSKQTPPVNFNAENSNNEEMLLKTEIKDEPIDYNSFVSSESAEEPVASLSKVEDSEINCEDSMITIGDTKVDVKKTEFFEYSFKIENDTAEEIPLKLEEATNKPLEQVDSSLVPQNFRTDPSVGIGEKQYECDITRYDKMPAYICRLCFAELKKFHQFQMQVIQSDKTLQRRVQQLAACPTQIKIERDLEEEPSDNFVSQNTETDVTTRCEPFEISPVFDFYSKQTPPVNFNAENSNNEEIPLKTEIKEEPLDYNSQIPTVCAEETVGSLSKVEDGEINCEDSMITTSDIKVNVNKSEFYAYSFKIENDTAEEIPMKLEETSNKQLEEVDGSLVPQNLRMDPSIDGEEKPYKCGDCKMRFKQAVYLKRHSLKHTGEKPHQCDICKMRFRHIRTLKNHELTHTGEKPYQCDICQMCFRQTIHLKNHKLTHSGEKPYQCDICQMSFREARVLKSHKLKHSGEKPHQCDICQLRFRQTIHLKIHKLKHTGEKPYQCDICKMRFRHSTTLRIHEFQHTGEKPYQCDVCQMGFRQAIHLKNHKITRYDNMPAYICRSCFAELKKFHQFQMQVIQSDKTLQRRVQQLADCPTQIKVERDVEEEPSDDSKSQNTKTDVTTRCEPFEVSNFYSRETPPVNYNAENSNCEEIPLKTEIKEEPLDYNSQIPTVSAEETVGSLSKVEDSEINCEDSMITTGDTKLDINRTEIFEHFFKTENGMAEEIPLKLEETCIKPLEEADSGLFPENLRMDPSIDTEDKPYKCDICQMCFREARVLKCHKLKHTGEKPHQCDICKMCFKQPIYLKRHLLLNHTEERQCDICKMCFTNTTSLNNHKLRHTGEKPHLCKICKISFTDPTTLRNHISQHTGEKPYMCDSCPQRFKQLGHLKTHRLRHAVEKQYQCGICQMCFKQAGQLKRHKLIHTKMKRHQCDICQMCYKDSRTLNKHKSIHTGEKPYQCEVCKTCFRQVATLRNHELIHKDEKPYQCDVCQMSFRQARHLKSHELKHTGEKPYQCKICKMSFRHSNSLKLHEFKHTMDTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01530842;
90% Identity: iTF_01530842;
80% Identity: iTF_01530842;