Xxan010226.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:42171251-42174866[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0042 3.2 8.5 0.1 16 48 165 195 162 197 0.85 2 9 0.012 9 7.0 0.0 18 46 194 222 192 228 0.88 3 9 1.8 1.4e+03 0.1 0.1 27 45 259 277 255 281 0.88 4 9 4.5 3.5e+03 -1.3 0.0 26 48 357 379 349 383 0.80 5 9 0.00069 0.53 11.0 0.0 16 46 405 434 402 436 0.86 6 9 0.0036 2.8 8.7 0.1 21 46 437 462 435 466 0.90 7 9 0.092 70 4.2 0.1 22 45 466 489 461 493 0.89 8 9 0.028 22 5.8 0.1 21 52 630 661 627 663 0.85 9 9 0.49 3.8e+02 1.8 0.0 21 43 686 708 679 712 0.83
Sequence Information
- Coding Sequence
- ATGATAACAGCTTGTGCTTGTGTACAGATATTTGAAGGGGACGGCCTTCCACCTCAAGTTTGTTCTAACTGTTTTGATCGCCTACTTCAAGCATATATATTTAAGCAACAATGTGAAAAAGCAGATCTCACTCTTCGTGATTACAAATACAAAACTATCACGAATTATTCACATTTTCTAGAAGATACTTCATCAGCCTTTTATTCAAGTGACGAAAACTTGAAACTATTTAAAGAAGATTCTGAAATGCATTACCAAAACAGTAAAGATCCAGACGAACTTAATAAAGAACAATACGAAAAAACCGATCTTAAACCTAAAAAGTCcggaaaaaataacaaaacaattatttgtAAAGAATGCGGAGAtatgtttgaaaataataaaattctaaaagagCACAGAAAAGAAAAACATCCCCGTATTACGAAAGATCAAATTTGCTCGATATGCTCAAAATCATTTAATGTATGGAAAATGGCGATTCACATGCGTAGTCATACTCAAGAAAAGCCATTTGCCTGTAATATATGTGGAAACAAGTTTAACGTCAAGTGTAATTTAAAACGTCATATGATGCGTCATACTGGAGAGCGACCTCATAAATGTCCGGTCTGTGACAAGGGTTTCATTCAGGCTTCTTCGTTAAGTGAACATTTGAAAGTTCACAATGAAGAAGCACCATTCCAGTGTACGATCAGTTCAAAGAGTTTTACGCAATCAGATCAACTTTGTGCacggATATACGAAGGAGACGGTTTTCCATCACAGTTGTGTTCAAATTGTTTTAATCAAGTGCTTCAATCTTATGCATTTAGGCGGCAATGCGAAAAAGCAGATGTTACTCTTCATAACCATGCATATAAAAATCTCAGCAATAATTCACTTGCTTTAGAAGATGCTGAGCCAGCTTTACATTCAGACGAtgaaaactcaataacaattaaAGAGGAAATATGCGAAGAAAAGATCGTCAAAAAAGAATCAGAAAAGTGTTCCAAGAatcttaagaataaaaaaactaataaatacaaTAAGACTGAAAATACTGTCGATAAATCATCttttacatgtaaaaaatgcGGTAACATATTCCAAAGTAATGTACTTTTAAGAGAtcatataaaagaaaaacaCCCATACAAAGGAAGAGAGAAAATTTGTACGATTTGCTCAAAATCCGTTAACGTATGGAGATTATCAATTCATATGCGTAGTCATACTCAAGAAAAGCCATTTACATGTCATATTTGTGGTGTCATGTTTAGTGTTAAAGGAAATTTAACGCGACATATGATGCTACATACTGGAGAGCGACCTCACAAATGTCCGATCTGTAATAAAGGCTTTATTCAGTCTTTTACTTTAACTGAACATTTAAGAGTTCATACTCGTGAAACCCCATTCCATTGCACTCTCTGTTCCAAAAGTTTTACTCAATCGGGTCAGTTACGTTTGCACGTAAAAAGACACAGCGAACCGGATAATGATCATGTGGTACACAGACCAAGACAGACTCACGGTGAACGTACTCGAAGATCTGATATTGCCCCGGAAGAAAGGAAACACGTTTGCTCCATTTGTCAGCGCGGATATTTATCGGAATTAGCACTCAAAACTCACCTAAGAATACATAGTGATAAAAAGTTTCTTTGCAGTGAATGCGGTAAAGGATTTGTTAGTCGTTCCAATTTAGTCATACATTCAAAAGTTCACACAGGAGAAAAATCGCATCGCTGTGCTGACTGTGGTAAATCATATACACAAATTGGTGCGCTGAAAGCGCATGCCGTAATTCATTCAGGGAtaaaaccgtaccagtgtacTATTTGTAATAGATCGTTTACTCATGCAATGTCTCTCAAAACACATTCATTATTACATACGGGGGAAAAGCCATTTTCATGTTCTTTGTGCGAAAAAGTTTTCACACAGAGACATCATTTGAAGTATCACATGAGAACACATtcaggagagaaaccatatgTGTGCAGTTATTGTGGTAAAGGATTTGCTCTCAAAGGAAATATGACTGTTCATGTAAGAACTCATACAGGTGAAACTCCTTATCTCTGTCCGGTGTGTGGAAAGGGATTTTATGATTCTAGCAGTATGAAAAAACATCATAAAGGGCATGGAAATAAAACAGTTGCAGGAAAAAACAACGAAACCGTTCTACATGATTAA
- Protein Sequence
- MITACACVQIFEGDGLPPQVCSNCFDRLLQAYIFKQQCEKADLTLRDYKYKTITNYSHFLEDTSSAFYSSDENLKLFKEDSEMHYQNSKDPDELNKEQYEKTDLKPKKSGKNNKTIICKECGDMFENNKILKEHRKEKHPRITKDQICSICSKSFNVWKMAIHMRSHTQEKPFACNICGNKFNVKCNLKRHMMRHTGERPHKCPVCDKGFIQASSLSEHLKVHNEEAPFQCTISSKSFTQSDQLCARIYEGDGFPSQLCSNCFNQVLQSYAFRRQCEKADVTLHNHAYKNLSNNSLALEDAEPALHSDDENSITIKEEICEEKIVKKESEKCSKNLKNKKTNKYNKTENTVDKSSFTCKKCGNIFQSNVLLRDHIKEKHPYKGREKICTICSKSVNVWRLSIHMRSHTQEKPFTCHICGVMFSVKGNLTRHMMLHTGERPHKCPICNKGFIQSFTLTEHLRVHTRETPFHCTLCSKSFTQSGQLRLHVKRHSEPDNDHVVHRPRQTHGERTRRSDIAPEERKHVCSICQRGYLSELALKTHLRIHSDKKFLCSECGKGFVSRSNLVIHSKVHTGEKSHRCADCGKSYTQIGALKAHAVIHSGIKPYQCTICNRSFTHAMSLKTHSLLHTGEKPFSCSLCEKVFTQRHHLKYHMRTHSGEKPYVCSYCGKGFALKGNMTVHVRTHTGETPYLCPVCGKGFYDSSSMKKHHKGHGNKTVAGKNNETVLHD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01530570;
- 90% Identity
- iTF_01530570;
- 80% Identity
- iTF_01530570;