Xxan010218.1
Basic Information
- Insect
- Xanthostigma xanthostigma
- Gene Symbol
- -
- Assembly
- GCA_963575645.1
- Location
- OY754468.1:42149563-42151277[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 8.1e-06 0.0062 17.2 0.5 20 52 230 262 224 264 0.85 2 9 0.0043 3.3 8.4 0.2 13 44 260 290 257 294 0.88 3 9 0.14 1.1e+02 3.6 0.0 21 48 295 322 292 326 0.86 4 9 0.00018 0.14 12.9 0.2 21 48 323 350 318 355 0.92 5 9 0.52 4e+02 1.8 0.2 19 43 364 388 350 395 0.66 6 9 9.1 7e+03 -2.2 0.0 21 41 421 441 416 448 0.75 7 9 0.0057 4.4 8.0 0.2 21 46 449 474 447 482 0.86 8 9 1.4 1.1e+03 0.4 0.1 21 44 477 500 472 504 0.76 9 9 0.18 1.3e+02 3.3 0.0 21 43 505 527 494 530 0.81
Sequence Information
- Coding Sequence
- atgagcaaaGCAGAAGAACTCAGATTTGATCAGATATGCCGTGCGTGTTTATCAGAAGGAGATTTACAACCAATGTTCGAATGTATCAAAGTTGAAGAcagtataattaacttttccgaTATGCTAATGACGTGTGCTTCTGTACAGgtaattGAAGGAGATGGTTTTCCTTCACAACTATGTCGAAACTGCGTTTACCAAGTAAACCAAGCGTATAATTTTAAGCTACAGTGTGAGAGGTCCGATACAAAAATGCGCGAATATTCTTTTAATATCATGCAAAATTCACCGGTAAGAGAAAATACAGAAGACTTTCCACTAGTCGATGACTTTGACCAAAAAGACTTTATATTAGATGATGAAATAGTGAAAACTGAGACTACACCGGAAGAAACAAATAACGAAAGTTCTGTAAATTTAAGTATTAACGGCACGCaaagaaaaagaataaaaaaagtcaaagtaCAGTATCAGCGCAAATATAAAATGAAGAGATgtagaaaaattcataacaCTGAACAGGATTCGGGTTATCAGTGCAAGAAGTGTAACGAAAAATTTGATTCGGCACAGGAGCTACACGACCATTACAAATCAAAACGTCATCCGATGCGCCGCGATCACGAATGTAATATATGCCATAGATTTTTCACCTCATCACAATTAGGAGTCCATATGCGTTCTCATACGAATGAAAAACCGTTTACCTGTGAGGTTTGCGCTCAACAGTTCCGTTTAAATTGTAATCTACGTCGGCATATGATGCTACATACCGGAGAAAAACCCAAAACACACGTCCGAGAAAAACCGTTCACATGCCAAAATTGTGGGCAGCAATTCAGTTTCAATTGTAACTTGCGTAGACATATGATGACGCACACGGGAGAACGACCTCATCAATGCCAACTTTGCGGTAAAGGATTTATTCAATCGAAAGCGCTGGTAAATCATATGAGGATGCATACGGGTGAAAAACCTTTCATCTGTAATATTTGTGGAAAAGGTTTTCGTCAAGCGGAAAGACTTCGTCATCACGTCAAGATGCACCACAATCCGAACGCGGCCGAATCGAAAAGGAAAAATGCATCTCATACAACGGAGCGACCGCATATTTGTGATATCTGTAATAAAGGGTATTATTCGAAAGGCGCACTCAAAACTCATCTGTTGTCGCATGGCGATAAATCGTTTTTGTGTAGTGTGTGCGGCAAAGGCTTTGTAGGTAATGCAGGACTTCAATCGCATTCAAAAATACATACCGGGGAAAAACCATACGATTGTGACGTTTGTGGAAAGAAATTTTCACATTctttttatcttaaattacaTACATTagttcatactggtgagaaaccgttttCGTGTTCGATATGCCAGAAAGTTTTCACACAGAGACCTCATTTGAAACATCATATGAGAACCCATTCCGGAGAAAAGCCTTACAGCTGTTCGGTATGCAGTAAAAGTTTTGCGCTTAATGGTAATTTGACCGTACATATGAGACAGCATTCCGGGGAAACTCCGTACATTTGTCCGGTTTGTGGAAAAGGGTTTTATGACTCTAGCAGTATGAAGAAACATCACAAAGGCCATGGTATTAGTATATCTGTACCTGATGCGACGAGAACAAATCAAAGCGCAAATTAA
- Protein Sequence
- MSKAEELRFDQICRACLSEGDLQPMFECIKVEDSIINFSDMLMTCASVQVIEGDGFPSQLCRNCVYQVNQAYNFKLQCERSDTKMREYSFNIMQNSPVRENTEDFPLVDDFDQKDFILDDEIVKTETTPEETNNESSVNLSINGTQRKRIKKVKVQYQRKYKMKRCRKIHNTEQDSGYQCKKCNEKFDSAQELHDHYKSKRHPMRRDHECNICHRFFTSSQLGVHMRSHTNEKPFTCEVCAQQFRLNCNLRRHMMLHTGEKPKTHVREKPFTCQNCGQQFSFNCNLRRHMMTHTGERPHQCQLCGKGFIQSKALVNHMRMHTGEKPFICNICGKGFRQAERLRHHVKMHHNPNAAESKRKNASHTTERPHICDICNKGYYSKGALKTHLLSHGDKSFLCSVCGKGFVGNAGLQSHSKIHTGEKPYDCDVCGKKFSHSFYLKLHTLVHTGEKPFSCSICQKVFTQRPHLKHHMRTHSGEKPYSCSVCSKSFALNGNLTVHMRQHSGETPYICPVCGKGFYDSSSMKKHHKGHGISISVPDATRTNQSAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511106;
- 90% Identity
- iTF_01511869;
- 80% Identity
- iTF_01530711;