Vnig013524.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- Bcl11b
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000040.1:1402518-1404233[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.5e-05 0.13 12.9 0.2 20 52 230 262 224 263 0.85 2 9 0.0012 2.1 9.1 0.4 13 44 260 290 257 298 0.86 3 9 0.72 1.3e+03 0.2 0.1 21 44 295 318 291 322 0.87 4 9 0.00041 0.74 10.5 0.1 21 47 323 349 319 354 0.91 5 9 1 1.9e+03 -0.4 0.1 19 35 364 380 350 393 0.67 6 9 1.8 3.2e+03 -1.1 0.0 21 43 421 443 414 452 0.79 7 9 0.0053 9.5 7.0 0.1 21 45 449 473 446 480 0.86 8 9 0.54 9.7e+02 0.6 0.2 21 44 477 500 472 504 0.78 9 9 0.089 1.6e+02 3.1 0.0 21 43 505 527 499 530 0.80
Sequence Information
- Coding Sequence
- atgAGCGAAACAAGAGAACTAAAATTTGAAGACATATGTCGTGCGTGTTTATCAGAAGGAGATTTGcaaccaatttttgaatatatcacAGTTGGGGATAGTACAATTAAATTTTCCGATATGCTGATGGCGTGTGCTTCTGTAGAGgtaaTACAAGGAGATGGTTTTCCTTCACAATTATGCCGAAACTGCATTTACCAAGTGAACCAAGCGTATAATTTTAAGCTGCAATGTGAGAAGTCTGATACAAAAatgcgcgaaaactctttaaatgTCATACAAAATTCACCGGTAAGAGACAATACGGAAGCCTTTCCACCAGTTgatgattttgaccaaaaagaCTATATATTAAATGATGAAATAGTGAAAACGGAAAATGCATGTGAAGAAACAAATAACGaaagttatgaaaatttaagtattaaCGGCACGCAAAGAAGAAGAGTAAAAAAAGTCAAAGTGCAGTATCAGCGCAAACATAAAATGAAGAGATGTAGAAAGATGCATTCCACTGAACAAGGTACGGGTTATCAGTGCAAAAAGTGTAgcgaaaaatttgaaacttctCAAGAGCTCCATGACCATTACAAATCAAAACGGCATCCGATGCGACGCGATCACGAATGCAATATATGCCATAAATTTTTCACTTCATCACAATTAGGAGTACATATGCGTTCTCATACCAATGAGAAACCGTTTACGTGTGAGGTTTGTGGTCAACAGTTTAGTTTAAATTGTAATCTACGTCGGCATATGATGTTACATACTggagaaaaacctaaaaaacacGTCCGAGAAAAACCGTTTACATGTCAATATTGTGGACAGCAATTTAGTTTCAATTGTAACTTGCGTAGGCACATGATGACACACACCGGAGAACGACCCCATCAATGTCAACTGTGCGGTAAAGGATTTATTCAATCGATAGCGCTAGCAAATCACATGAGAACACATACGGGTGAAACACCTTTCATCTGTAATATTTGTGGAAAAGGTTTTCGTCAAGCGGAAAGACTTCGTCATCACGTTAAACTGCACAGCAATCCGAACGCGTCCGAATCCAAAAGGAAAAATGCGTCTCATACATCGGAGCGATCACATATTTGTGATATCTGTAATAAGGGATATTATTCGAAAGGGGCACTCAAAACTCATTTGTTATCGCATGGCGATAAATCGTTTTTATGTAGTGAGTGCGGTAAAGGCTTTGTAAGTAATGCAGGACTTCAATCGCATTCTAAAATACATACTGGGGAGAAACCGTATGATTGTGATGTTTGTGGAAAGAAATTTTCACATTCTGTTTCTCTTAAATTACATACATTagttcatactggtgagaaaccgtttTCGTGTTCGATCTGTAAAAAAGTTTTCACACAGAGACCtcatttaaaataccatatgaGAACACATTCTGGTGAAAAACCTTACAGTTGTTCGGTGTGCAGTAAAAGTTTTTCACTTAATTGTAATTTGACCGTACATATGAGACAACATTCTGGTGAAACTCCCTACATTTGTCCGGTTTGTGGAAAAGGGTTTTATGATTCTAGCAGTATGAAGAAACATCACAAAGGTCATGGAATTAGCAATATTTTAcagaatgaaaatattttttatattaaaactgaataa
- Protein Sequence
- MSETRELKFEDICRACLSEGDLQPIFEYITVGDSTIKFSDMLMACASVEVIQGDGFPSQLCRNCIYQVNQAYNFKLQCEKSDTKMRENSLNVIQNSPVRDNTEAFPPVDDFDQKDYILNDEIVKTENACEETNNESYENLSINGTQRRRVKKVKVQYQRKHKMKRCRKMHSTEQGTGYQCKKCSEKFETSQELHDHYKSKRHPMRRDHECNICHKFFTSSQLGVHMRSHTNEKPFTCEVCGQQFSLNCNLRRHMMLHTGEKPKKHVREKPFTCQYCGQQFSFNCNLRRHMMTHTGERPHQCQLCGKGFIQSIALANHMRTHTGETPFICNICGKGFRQAERLRHHVKLHSNPNASESKRKNASHTSERSHICDICNKGYYSKGALKTHLLSHGDKSFLCSECGKGFVSNAGLQSHSKIHTGEKPYDCDVCGKKFSHSVSLKLHTLVHTGEKPFSCSICKKVFTQRPHLKYHMRTHSGEKPYSCSVCSKSFSLNCNLTVHMRQHSGETPYICPVCGKGFYDSSSMKKHHKGHGISNILQNENIFYIKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511106;
- 90% Identity
- iTF_01511106; iTF_01530662; iTF_01531623; iTF_01530711; iTF_01531616;
- 80% Identity
- iTF_01511106;