Xxan021903.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Xanthostigma xanthostigma
Gene Symbol
-
Assembly
GCA_963575645.1
Location
OY754475.1:1028918-1031810[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 29 2 41 5.4 0.5 10 23 17 30 14 30 0.93
2 29 0.00013 0.0027 18.6 3.2 1 23 36 58 36 58 0.98
3 29 0.0018 0.036 15.0 6.8 1 20 64 83 64 85 0.95
4 29 0.00035 0.0071 17.3 2.1 1 23 108 130 108 130 0.98
5 29 1.5e-05 0.00031 21.5 2.0 1 23 136 158 136 158 0.99
6 29 0.0005 0.01 16.8 4.5 1 23 162 184 162 184 0.96
7 29 8.6e-05 0.0018 19.2 0.2 1 23 190 212 190 212 0.98
8 29 5.3e-06 0.00011 23.0 2.6 1 23 218 240 218 240 0.98
9 29 1.9e-05 0.00039 21.2 3.3 3 23 248 268 246 268 0.98
10 29 0.055 1.1 10.3 4.5 1 23 274 296 274 297 0.95
11 29 0.01 0.21 12.6 1.1 1 21 303 323 303 325 0.95
12 29 6.4e-05 0.0013 19.6 4.4 1 23 415 437 415 437 0.97
13 29 1.1 22 6.3 4.6 1 21 443 463 443 465 0.90
14 29 9.1e-05 0.0019 19.1 0.8 1 23 471 493 471 493 0.98
15 29 0.0037 0.077 14.0 4.3 1 20 499 518 499 521 0.95
16 29 4e-05 0.00081 20.2 5.5 1 23 527 549 527 549 0.99
17 29 4.6e-05 0.00094 20.0 2.0 1 23 570 592 570 592 0.98
18 29 0.31 6.3 8.0 3.6 1 23 598 620 598 620 0.87
19 29 0.003 0.061 14.3 3.0 1 21 626 646 626 648 0.95
20 29 7.7e-05 0.0016 19.3 2.7 1 23 654 676 654 676 0.98
21 29 0.00018 0.0038 18.1 5.7 1 20 686 705 686 708 0.95
22 29 3.1e-05 0.00063 20.6 3.0 1 23 714 736 714 736 0.99
23 29 6e-05 0.0012 19.6 6.9 1 23 742 764 742 764 0.99
24 29 2.2e-05 0.00045 21.0 0.6 1 23 770 792 770 792 0.96
25 29 0.00078 0.016 16.2 4.7 1 21 798 818 798 820 0.92
26 29 3.9e-06 7.9e-05 23.4 1.2 1 23 826 848 826 848 0.99
27 29 0.00016 0.0033 18.3 3.5 1 23 854 876 854 876 0.98
28 29 3.3e-05 0.00069 20.5 6.0 1 23 882 904 882 904 0.99
29 29 0.0011 0.022 15.7 2.9 1 23 910 932 910 932 0.97

Sequence Information

Coding Sequence
ATGCAGCAAAAGATTTTCACAGAACTGCGACTTGATTCGACACAATACTTCAACACCGCCGACGGTTTAAAAATTCATCACCGTACCCACACCGGCCAGCAGCGCTATCAGTGCGACATCTGCGATAAACGCTTCAGCTACTGCGGCAGTTTGAAAGGCCACAAACGCCTGCATACGGGCGAGAAGCCTTACAGGTGCGAAAAGTGTTACAAGTGCTTCACACAAAAGAGTACGTTAAACACGCATCGATGCGGCGATGCGCCCCGGGTGCGTAAAAAACCGGCGCCCGGCACGATCAAGAAACGAACCGAACAGAAGCCCTACTTCTGCGAGATCTGTTTCAAATGTTTCAGCGCTCCGAGTAAATTGGCCGCGCATAAAAGATCGCATACGGGCGAACGGCCGTTCCAGTGCGACGTCTGCGATAAAGGTTTTATACAGAACTGCGATTTGAACCGACATAAAAGGATTCATAAGAAGCCGCACAAATGCGACGAGTGTGATCGAAGCTTTATGCAAAAGAGCGATTTAGTTAAGCATAAAGAACATCACACCATGAAAGTTCCTTACAAGTGTGACAtttgcaataaatattattcgtCTTTGGCTAGCCTACAAGCGCACGCCCAAGTTCATGGTGAAAAGAAACGTTTTCAGTGCGACGTGTGTAAGAAACGCTTCACGTTTTCGAGTAATTTGACGGCCCACAAACGCCTACATTACGGGGAGAAGCCGTACGGGTGTAAAATCTGCGACAAACGCTTCGCGCATAAAAACAACTTGAAAATTCATAGACGTTCCCACGTTAAAGATAAACAGTATCGGTGTAACGTTTGCGACAAGGCTTTttctaaaatgaaaatattcaagaTGCACAAACGCAGTCATCACGTCAACGAAAAGAGTTTTAAGTGCGAAGTGTGCTCCGAAACGTTTGCGGTTTCGAGCGAGCTCGATGCGCATAAACGGTGCCACGACGGTAAAGACAAAGAATGCAAGAACGAAGTGTTTATCAAAGAAGAGGACAGCTACGACGACGATTTTGCGTATTCCGTGTTCGATACGGCTGAAATATTGGACGACGATAATTTGGAATTTAAAACCGATTCGCAAGAAGTGATGGAGATCAAACAAGAGAATATCGTGAATGAAATTACTCAGACGTTACTTCAAAGTGCCGTTAAAACGGAGTACGGTACAAAAGTGTTgaagattaaattaaaaaagccTTCGGACAAGCCGTTCCAGTGCGACGTGTGCAGCAAATGTTTTAGTTATGCAAGCAGTttgaaaaaacacaaattaaacCACACGGGAGAAAAAACATTTCAGTGCGAACTGTGCGATAAAAGTTTCTTCCAGTTGCAAATTTATAAATCGCACCAACGTTGTCACACAggggagaaaccttatcagtgtgatatTTGCAGTAAAAGTTTCAGTCAGATGGGCGGATTGATATCCCATAAACGTTTCCAtaccggagagaaaccgtatcagtgcgaAATTTGCGAGAAACGTTTTGCTCATATAAGCAATTTATACAAACACAAACTTTGTCACGACGACGTGAAGCATTACCAGTGTGAAATATGTGCGAAATGTTTCAAGCACTCGTCGAGTTTAAATTCTCATCGGCTGACCCACCCGTCCGTTAAGCAGAGTATAGCCGAACCGATCGACGACGCGCCGTTATCCGAAAAGACGCATCAGTGCGAAATATGTAAAAAGTTCTATTCGACTCCGGCCGTCTTAAAGACTCACATGCAGACGCACAGCGACGAGAAGCCGTATCGCTGCGACTTGTGTCCAAAGAGTTTCTCGCAGCTCCGCATCTTCCGATGCCACCAACGTCTTCATACTGGAGAGAAGCcctatcagtgtgacgtttgcagcaAGAGGTTCAGTCAAATGAGCGGTTTGATTTCGCACAAACGCTGTCATacgggtgagaaaccgtaccagtgtgaagTTTGCGAGAAGAGTTTCGCGCACATCAGCAACTTGTATAGGCACAAACAGTACCACGTCGAGAAAGAGTGCGACGACAGACCGTATAAATGCGACGATTGCGGCAAGTGTTTTGCCAACAAAGAATACTTGCAGTCGCACCGATTGTGTCACACGACCAATAAACCGTACCAGTGCGACGTCTGCGGCAAAAGTTTTCATCGAATGAGCAAACTCATGTCGCATAAACGCGTTCATACGGGCGAGAAACCGTACAAGTGCGACAGCTGCGAGAAATGTTTTTCGCATTCGTCGTCGTTGAAAGCTCACAAACGgtcacataccggtgagaagccTTACCTGTGCAACATTTGCAGCAAAAGTTTTACTCGCGTCGAAAGTTTGCGAGCGCACGAACGGATGCACAGCGGTAAGAAACCGTTCTTGTGCGACGTGTGCTACAAACGGTTCAGCAGTTCGTCGAACTTAAAAACTCATCAGCGCTGTCACACGGGCGAGAAGCCGTTCCAGTGCGACGTTTGCGACAAACAGTTCTCGCAAAAGAACGCGCTTATCTCGCATAAACGCAcgcatactggagagaaaccttTCCATTGCGACGTTTGCGATAAAAATTTTTCGCAGTTGACTTCGCTGAAGGAGCATAAACGgtcacataccggtgagaagccGTTCCAGTGTGAAGTTTGCAATAAGTGCTTCTCTCAGTCAAGCTATTTCAAGGAACACAAACGCTCACATACAGGGGAGAAACCGCATATGTGTAACATTTGTTATAAGCCGTTCAATTATTTGAGTGCATTGTATACACATAAACGCACGCATAAGAAAAATCTGATAAACGTAATTGAAAAGTTTGACGGTGTTCAGTAA
Protein Sequence
MQQKIFTELRLDSTQYFNTADGLKIHHRTHTGQQRYQCDICDKRFSYCGSLKGHKRLHTGEKPYRCEKCYKCFTQKSTLNTHRCGDAPRVRKKPAPGTIKKRTEQKPYFCEICFKCFSAPSKLAAHKRSHTGERPFQCDVCDKGFIQNCDLNRHKRIHKKPHKCDECDRSFMQKSDLVKHKEHHTMKVPYKCDICNKYYSSLASLQAHAQVHGEKKRFQCDVCKKRFTFSSNLTAHKRLHYGEKPYGCKICDKRFAHKNNLKIHRRSHVKDKQYRCNVCDKAFSKMKIFKMHKRSHHVNEKSFKCEVCSETFAVSSELDAHKRCHDGKDKECKNEVFIKEEDSYDDDFAYSVFDTAEILDDDNLEFKTDSQEVMEIKQENIVNEITQTLLQSAVKTEYGTKVLKIKLKKPSDKPFQCDVCSKCFSYASSLKKHKLNHTGEKTFQCELCDKSFFQLQIYKSHQRCHTGEKPYQCDICSKSFSQMGGLISHKRFHTGEKPYQCEICEKRFAHISNLYKHKLCHDDVKHYQCEICAKCFKHSSSLNSHRLTHPSVKQSIAEPIDDAPLSEKTHQCEICKKFYSTPAVLKTHMQTHSDEKPYRCDLCPKSFSQLRIFRCHQRLHTGEKPYQCDVCSKRFSQMSGLISHKRCHTGEKPYQCEVCEKSFAHISNLYRHKQYHVEKECDDRPYKCDDCGKCFANKEYLQSHRLCHTTNKPYQCDVCGKSFHRMSKLMSHKRVHTGEKPYKCDSCEKCFSHSSSLKAHKRSHTGEKPYLCNICSKSFTRVESLRAHERMHSGKKPFLCDVCYKRFSSSSNLKTHQRCHTGEKPFQCDVCDKQFSQKNALISHKRTHTGEKPFHCDVCDKNFSQLTSLKEHKRSHTGEKPFQCEVCNKCFSQSSYFKEHKRSHTGEKPHMCNICYKPFNYLSALYTHKRTHKKNLINVIEKFDGVQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530481; iTF_01510993; iTF_01510992;
90% Identity
iTF_01510993;
80% Identity
-