Vnig012509.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000034.1:3664837-3668121[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 0.089 2.4 9.3 3.4 1 22 55 76 55 76 0.94
2 32 2e-06 5.5e-05 23.9 2.7 1 23 99 121 99 121 0.99
3 32 0.00014 0.0038 18.1 4.1 1 23 127 149 127 149 0.98
4 32 0.0024 0.065 14.3 1.6 1 23 155 177 155 177 0.99
5 32 0.00012 0.0033 18.4 3.2 1 23 183 205 183 205 0.98
6 32 0.0016 0.044 14.8 6.8 1 20 211 230 211 232 0.95
7 32 0.00031 0.0086 17.0 2.1 1 23 255 277 255 277 0.98
8 32 1.4e-05 0.00037 21.3 2.0 1 23 283 305 283 305 0.99
9 32 0.0012 0.033 15.2 5.1 1 23 309 331 309 331 0.96
10 32 7.8e-05 0.0021 18.9 0.2 1 23 337 359 337 359 0.98
11 32 4.8e-06 0.00013 22.7 2.6 1 23 365 387 365 387 0.98
12 32 1.5e-06 4.2e-05 24.3 3.7 1 23 393 415 393 415 0.99
13 32 5.8e-05 0.0016 19.3 2.8 1 23 421 443 421 443 0.98
14 32 0.002 0.054 14.5 0.1 1 23 449 471 449 471 0.96
15 32 5.8e-05 0.0016 19.3 4.4 1 23 561 583 561 583 0.97
16 32 0.96 26 6.1 4.6 1 21 589 609 589 611 0.90
17 32 0.00022 0.006 17.5 0.9 1 23 617 639 617 639 0.98
18 32 0.0034 0.093 13.8 4.3 1 20 645 664 645 667 0.95
19 32 3.6e-05 0.00098 20.0 5.5 1 23 673 695 673 695 0.99
20 32 4.1e-05 0.0011 19.8 2.0 1 23 716 738 716 738 0.98
21 32 0.28 7.6 7.8 3.6 1 23 744 766 744 766 0.87
22 32 0.0027 0.074 14.1 3.0 1 21 772 792 772 794 0.95
23 32 7e-05 0.0019 19.1 2.7 1 23 800 822 800 822 0.98
24 32 0.00017 0.0046 17.9 5.7 1 20 832 851 832 854 0.95
25 32 2.8e-05 0.00076 20.3 3.0 1 23 860 882 860 882 0.99
26 32 5.4e-05 0.0015 19.4 6.9 1 23 888 910 888 910 0.99
27 32 2e-05 0.00055 20.8 0.6 1 23 916 938 916 938 0.96
28 32 0.0007 0.019 15.9 4.7 1 21 944 964 944 966 0.92
29 32 3.5e-06 9.6e-05 23.2 1.2 1 23 972 994 972 994 0.99
30 32 0.00015 0.004 18.1 3.5 1 23 1000 1022 1000 1022 0.98
31 32 3e-05 0.00083 20.2 6.0 1 23 1028 1050 1028 1050 0.99
32 32 0.00095 0.026 15.5 2.9 1 23 1056 1078 1056 1078 0.97

Sequence Information

Coding Sequence
ATGAAAATGGATGCAACAATAACAGAACATGTTCcggaagaaaataaaatagatgctCGTATCGAAGCTGACCGACACACTAATATGAATGATCTTGGTGTAAAACTAGAAATTAGTTTAGATGAAACATTGGCGAATTTATACGAAACTGCGTGCAACGACTTCAAGTGCAAAGACTGCCAACAGTATTTCGGTGACAAAAGTAGTTTCGACGCTCACAAATGTACTCAACCAACTGAAAAATCTCAAGAGTGTAATAACGAACCAAAAAAGAACGTTATAcagaaattaaattatcaatGTGATATTTGCGGTAAATGTTTCAAGGCACCTAGTAAATTAACGTCGCATTATCGGTCGCATACCGGAGAACGtccgtatcaatgtgacgtttgcagCAAAAGGTTTTCTCAAAACTGCGATTTGATCCGACACAGTAAACGTCACGTAAGTGACAAACCTTACCGTTGCGACATTTGTATCAGATACTTCAATACTGCCGACGGTTtgaaaatccatcaccgtaccCACACTGGCCAGCAACGTTATCAATGCGATATTTGCGATAAACGTTTCAGCTACTGCGGTAGTTTGAAAGGTCATAAACGTCTGCATACAGGTGAGAAACCTTATAGATGCGAAAAGTGTTATAAATGTTTTACCCAAAAAAGTACGCTGAATACACATCGATGCGGCGATGCACCGCGAGTACGTAAAAAACCGGCGCCCGGTACGATCAAGAAACGAACCGAACAGAAACCCTACTTCTGCGAGATTTGTTTCAAATGTTTCAGTGCTCCCAGTAAACTAGCCGCCCATAAAAGATCGCATACGGGCGAACGTCCATTTCAATGCGATGTCTGCGATAAAGGTTTTATACAGAACTGCGATTTGAACAGACATAAACGGATTCATAAAAAACCTCACAAATGCGATCAGTGTGATAGGAGCTTTATGCAAAAGAGTGACTTAGTTAAGCATAAAGAACATCACACAATGAAAGTACCTTACAAATGTGACatctgtaataaatattattcgtCTTTGGCTAGCTTACAAGCGCACGCCCAAGTTCACGGTGAAAAGAAACGCTTTCAGTGCGACGTGTGTAAAAAACGGTTTACGTTTTCGAGTAATTTAACAGCGCATAAACGTCTTCATTACGGAGAGAAACCGTACGAATGTAAAATCTGTGACAAACGTTTCGcacataaaaacaacttgaaaaTTCATAGGCGGTCTCACGTAAAAGACAAACAGTATCGGTGTAATGTTTGCGACAAGAGTTTTTCTAAAATgaagatgttgaaaatacacaaacGAAATCATGTCAATGAAAAGAGTTTTAAGTGCGATGTGTGTTCTGAAACGTTTGCAGTTTCGAGTGAACTCGATGCACATAAGCAAGATCATAACGATAAAGACAACGATTACAAAAATGAAGTATTTATTAAAGAAGAAGATAGTTACGATGACGATTTTGCTTATTCTGTGTTCGATACGGCTGAAATTTTGGACGATGATAATTTGGAATTTAAAACTGATTCGGAAGCAGCGATTGATATCAAACAAGAGAATATCGTAAATGAAATCACACAAACGTTACTTCAAAGTGCTGTTAAAACGGAAGACGGTAAAAAAGTGttaaagattaaattaaaaaagcctTTGGACAAACCGTTTCAATGTGATGTTTGTAGCAAATGTTTTAGTTATGCGAGTAGTTTGAAGAAGCATAAATTAAACCACACTGgtgaaaaaacatttcaatgtGAACTGTGTGATAAGAGTTTCTTCCAGTTGCAAATTTATAAGTCTCATCAACGGTGTCACACGGGTGAGAAACCTTACCGGTGCGACGTTTGCAGTAAAAGTTTTAGTCAGATGGGCGGATTGATTTCCCATAAACGTTTCCATACcggagagaaaccgtatcagtgcgAAATTTGTGAAAAACGGTTCGCTCACATAAGTAATTTGTACAAACATAAACTTTGCCATGACGACGTAAAGCATTACCAATGCGAAATATGCGCGAAGTGTTTCAAGCACTCATCGAGTTTAAATTCACATCGACTCACCCATCCGTCTGTTAAGCAGAGCATCGCTGAACCGATCGATGACGCGCCGTTATCCGAAAAGACGCACCAATGcgaaatatgtaaaaagttttattctacTCCAGCTGTTTTAAAGACTCATATGCAGACGCACAGCGACGAAAAACCATATCGTTGCGATTTGTGTCCGAAGAGTTTTTCGCAGCTTCGTATCTTCCGATGCCACCAACGTCTtcatactggagagaaaccttaccagtgtgacgtttgcagtAAGAGGTTTAGTCAAATGAGCGGTTTGATTTCACACAAACGGTGCCATACAGGGGAGAAACCGTACCAATGTGAAGTTTGCGAAAAGAGCTTCGCGCATATCAGCAACTTGTATCGGCACAAACAGTACCACGTCGAGAAAGAATGCGATGACAGACCTTATAAATGTGACGATTGTGGTAAGTGTTTTGCCAACAAAGAATACTTACAATCGCACAGGTTGTGCCACACGACCAATAAACCATACCAGTGCGATGTTTGTGGCAAAAGTTTTCATCGAATGAGCAAACTTATGTCTCATAAACGTGTTCATACTGGCGAAAAACCTTACAAATGTGATAGCTGCGAGAAATGTTTTTCGCATTCGTCGTCGTTGAAAGCTCACAAACGGTCACATACCGGTGAAAAGCCTTATTTATGCAACATTTGCAGCAAAAGTTTCACTCGCGTCGAAAGTTTGCGAGCCCATGAACGGATGCACAGCGGTAAGAAACCGTTCTTGTGCGACGTGTGCTACAAACGATTCAGCAGTTCATCTAACCTAAAAACTCATCAGCGGTGTCACACAGGTGAGAAACCATTCCAGTGCGATGTTTGCGACAAACAGTTCTCGCAAAAGAACGCGCTGATTTCacacaaacgtacacataccGGAGAGAAACCTTTTCATTGTGACGTTTGCGATAAAAACTTTTCGCAGCTTACTTCGTTGAAGGAACATAAACGGTCGCATACCGGCGAGAAACCGTTCCAGTGTGAAGTTTGCAACAAGTGCTTCTCTCAGTCGAGCTATTTTAAGGAACACAAACGCTCACATACCGGGGAGAAACCGCATATGTGTAACATTTGTTATAAGCCGTTCAATTATTTAAGTGCGCTCTATACACATAAACGGACGCATAAGAAAAATCTGATGAACGCAATCGAAAAGTTTGACGGTGTTCATCAGTAA
Protein Sequence
MKMDATITEHVPEENKIDARIEADRHTNMNDLGVKLEISLDETLANLYETACNDFKCKDCQQYFGDKSSFDAHKCTQPTEKSQECNNEPKKNVIQKLNYQCDICGKCFKAPSKLTSHYRSHTGERPYQCDVCSKRFSQNCDLIRHSKRHVSDKPYRCDICIRYFNTADGLKIHHRTHTGQQRYQCDICDKRFSYCGSLKGHKRLHTGEKPYRCEKCYKCFTQKSTLNTHRCGDAPRVRKKPAPGTIKKRTEQKPYFCEICFKCFSAPSKLAAHKRSHTGERPFQCDVCDKGFIQNCDLNRHKRIHKKPHKCDQCDRSFMQKSDLVKHKEHHTMKVPYKCDICNKYYSSLASLQAHAQVHGEKKRFQCDVCKKRFTFSSNLTAHKRLHYGEKPYECKICDKRFAHKNNLKIHRRSHVKDKQYRCNVCDKSFSKMKMLKIHKRNHVNEKSFKCDVCSETFAVSSELDAHKQDHNDKDNDYKNEVFIKEEDSYDDDFAYSVFDTAEILDDDNLEFKTDSEAAIDIKQENIVNEITQTLLQSAVKTEDGKKVLKIKLKKPLDKPFQCDVCSKCFSYASSLKKHKLNHTGEKTFQCELCDKSFFQLQIYKSHQRCHTGEKPYRCDVCSKSFSQMGGLISHKRFHTGEKPYQCEICEKRFAHISNLYKHKLCHDDVKHYQCEICAKCFKHSSSLNSHRLTHPSVKQSIAEPIDDAPLSEKTHQCEICKKFYSTPAVLKTHMQTHSDEKPYRCDLCPKSFSQLRIFRCHQRLHTGEKPYQCDVCSKRFSQMSGLISHKRCHTGEKPYQCEVCEKSFAHISNLYRHKQYHVEKECDDRPYKCDDCGKCFANKEYLQSHRLCHTTNKPYQCDVCGKSFHRMSKLMSHKRVHTGEKPYKCDSCEKCFSHSSSLKAHKRSHTGEKPYLCNICSKSFTRVESLRAHERMHSGKKPFLCDVCYKRFSSSSNLKTHQRCHTGEKPFQCDVCDKQFSQKNALISHKRTHTGEKPFHCDVCDKNFSQLTSLKEHKRSHTGEKPFQCEVCNKCFSQSSYFKEHKRSHTGEKPHMCNICYKPFNYLSALYTHKRTHKKNLMNAIEKFDGVHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01530486;
90% Identity
iTF_01510993;
80% Identity
iTF_01510993;