Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352223.1:326885-328762[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.014 0.78 10.5 2.4 1 23 51 73 51 73 0.96

2 16 1.2 68 4.4 0.0 2 23 102 123 101 123 0.94

3 16 0.0064 0.37 11.6 0.5 2 23 144 166 143 166 0.94

4 16 0.00075 0.043 14.5 3.2 3 23 173 194 172 194 0.97

5 16 0.018 1 10.2 0.7 1 23 199 222 199 222 0.94

6 16 0.27 16 6.4 0.1 2 23 225 247 224 247 0.94

7 16 0.0011 0.064 14.0 1.2 2 21 254 273 253 274 0.93

8 16 0.0096 0.55 11.0 0.8 1 23 332 355 332 355 0.92

9 16 0.99 56 4.7 0.1 3 23 384 405 382 405 0.93

10 16 0.088 5 8.0 0.2 3 23 429 451 427 451 0.95

11 16 0.00038 0.022 15.4 0.4 3 20 458 475 456 479 0.90

12 16 0.01 0.57 11.0 0.4 1 23 484 507 484 507 0.97

13 16 0.00046 0.026 15.2 1.0 2 23 513 535 513 535 0.94

14 16 3.1e-05 0.0018 18.8 4.7 1 23 539 562 539 562 0.97

15 16 0.051 2.9 8.7 2.2 2 23 569 590 568 590 0.96

16 16 0.0078 0.44 11.3 3.1 1 23 596 618 596 618 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.014	0.78	10.5	2.4	1	23	51	73	51	73	0.96
2	16	1.2	68	4.4	0.0	2	23	102	123	101	123	0.94
3	16	0.0064	0.37	11.6	0.5	2	23	144	166	143	166	0.94
4	16	0.00075	0.043	14.5	3.2	3	23	173	194	172	194	0.97
5	16	0.018	1	10.2	0.7	1	23	199	222	199	222	0.94
6	16	0.27	16	6.4	0.1	2	23	225	247	224	247	0.94
7	16	0.0011	0.064	14.0	1.2	2	21	254	273	253	274	0.93
8	16	0.0096	0.55	11.0	0.8	1	23	332	355	332	355	0.92
9	16	0.99	56	4.7	0.1	3	23	384	405	382	405	0.93
10	16	0.088	5	8.0	0.2	3	23	429	451	427	451	0.95
11	16	0.00038	0.022	15.4	0.4	3	20	458	475	456	479	0.90
12	16	0.01	0.57	11.0	0.4	1	23	484	507	484	507	0.97
13	16	0.00046	0.026	15.2	1.0	2	23	513	535	513	535	0.94
14	16	3.1e-05	0.0018	18.8	4.7	1	23	539	562	539	562	0.97
15	16	0.051	2.9	8.7	2.2	2	23	569	590	568	590	0.96
16	16	0.0078	0.44	11.3	3.1	1	23	596	618	596	618	0.97

Sequence Information

Coding Sequence: ATGAGGGTACATTTACAGTACAAAACTAATTTCTTTTCAGGTTTAAAACCACGCAAATACAAAGGCGAATCATCATCGATGCGCAGAAGGAGAAATCTTGAAATAGTATTCAACAACACATCGATTATACCGTTCAAGTGGAGGGGGAAATATCTATGTTTCTACTGCAGTCAAAACCTCACCGATTACACAGAATTGAGGAAACACACCAAGTCTCATGGAAACTGCTCGATTCTAGATCATTCGCTGAAGGTTTTGAAAGGTGGTACTAATATGGAAATCAAAATAGACGTTTCAGATATCACTTGTAAAATTTGCGATGTCATTCTACCCTCCTTCGAAGCTGCGATAGATCATTTGAAAATTCATAAAATTGAGTATGATAAAGACGTAGATATGGCTATAGAAGAGTATAAACTCTCAGATCTAAGCTGTCTGTCTTGTGACGAAAAGTTCACATACTTTGGTTATCTAGTGTCGCATATGAATAATAACCATCCGAAAAATTGTATTCTCTGCGATAAATGTAACCAAAAGTTCAATAAGAAAAGAGATTTATTTTCACATATGAAGAATTATCATAGAGAAGGGGGTTACCAGTGCGATCTTTGTCCACAGACTTTTGGTTCTTTGAATATATTGAGAAAGCATAGAAGCAACCGACATCTCACAAGATGTAGCTTATGCCAGTTGCGTCTTCCATCTGCCGCTTTGATACAAAAACATATGGAGCTCGAACATCCAGACGATGGTTCTTTACAATGCGACAACTGCGATAAAGAATTTCACACAAAAACAGGACTTAGAATGCACGAGAGAAAGTGCAAAGTCGATCTTCTCGATTTTACCTTGAAGAAAGAAGACTACACAATGGATTTGGATCAGAACTACGAAGATCCCACAAAACGGCCGAGCGTGAAGCAAATCAGGGAGAACATAGTCATCGTTATCAACATGTCTACAGCTATACCTTTCAACTTCTACAAAAACAAATTCAATTGCTTCTATTGCTCCAAAGATTTCCAGGATTCAGATTCAATGAGAGACCACACGGTTGTCGAGCACCCGGTCTGTGATATCAAAGAGAAATGCATAAGAAAATGCAGGGAAACAGTAACATGCGTCAAAATAGATGTAGCAACCTTAGCTTGCAAAATCTGCTTTGAAAACATGACTGATCTCGACAAACTTTTAGATCATTTGATCGTGAAGCACAAAGCCAACTACGACAAGTCTATTACAACATGTTTACAGCCTTACAGATTGATCAAAGATCACATGGCGTGCCCTAACTGCCCGTCTGAAATCTTCCGTTTCTTCGGAACTCTACTAAAACATATGAATAAAGTCCACACGAACAATAACATTATCTGCGTGTATTGTGGAGAGACGTTTCGTCGCGATCAGAATCTGCGCGTTCATATATGGAGGCACCACAGAGACGGCAGGTTCAAATGTAACATTTGCGACGCTGACTGCAGTATCCCATCACGTCTGTACATGCACATGGCCAGGGCTCACGGCGTCAAAGCGGCTAAATGCCCCAAATGCCCGGAATGCTTCGCAACACAGTACTTACGGCAGAAACATCTGATCGAAGCTCACAACTCTGGACACAAGTGCAGTTATTGCGGGAAGCTGTTTACAAGGAACTCGTTTATGCGTGATCATATCAGACGGACACATTTGAAGGAGAAGAATGTAGAGTGTTCTATTTGCTGTATGAAGTTCTTCAATAATATCCTGCTTAGACGGCACATGGTTAAACACAGCGGGGAGAAGAATTTCCATTGCGATGTTTGTGGGGAGAGATTCTTTTGGAGGAAGAGTTTGAGGAGTCATATGACTAGGCATAGCAAACACCTTCCGTTGATGTAG
Protein Sequence: MRVHLQYKTNFFSGLKPRKYKGESSSMRRRRNLEIVFNNTSIIPFKWRGKYLCFYCSQNLTDYTELRKHTKSHGNCSILDHSLKVLKGGTNMEIKIDVSDITCKICDVILPSFEAAIDHLKIHKIEYDKDVDMAIEEYKLSDLSCLSCDEKFTYFGYLVSHMNNNHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFGSLNILRKHRSNRHLTRCSLCQLRLPSAALIQKHMELEHPDDGSLQCDNCDKEFHTKTGLRMHERKCKVDLLDFTLKKEDYTMDLDQNYEDPTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFQDSDSMRDHTVVEHPVCDIKEKCIRKCRETVTCVKIDVATLACKICFENMTDLDKLLDHLIVKHKANYDKSITTCLQPYRLIKDHMACPNCPSEIFRFFGTLLKHMNKVHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDADCSIPSRLYMHMARAHGVKAAKCPKCPECFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICCMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRSHMTRHSKHLPLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856923;
90% Identity: iTF_00267475; iTF_00737707; iTF_01220003; iTF_00377349; iTF_00361873; iTF_00638871; iTF_00662464; iTF_00661575; iTF_01528596;
80% Identity: -