Basic Information

Insect: Colostygia pectinataria
Gene Symbol: -
Assembly: GCA_951394395.1
Location: OX596376.1:4237459-4239072[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.55 31 5.7 0.0 2 23 11 33 10 33 0.92

2 15 0.0021 0.12 13.3 0.6 2 23 54 76 53 76 0.95

3 15 0.00071 0.041 14.8 3.2 3 23 83 104 82 104 0.97

4 15 0.0025 0.14 13.0 1.1 1 23 109 132 109 132 0.95

5 15 0.26 15 6.7 0.2 2 23 135 157 134 157 0.94

6 15 0.0009 0.052 14.4 1.0 2 22 164 184 163 184 0.93

7 15 0.0027 0.15 12.9 0.4 1 23 242 265 242 265 0.92

8 15 0.29 17 6.5 0.1 3 23 294 315 292 315 0.94

9 15 0.032 1.8 9.6 0.3 3 23 339 361 337 361 0.96

10 15 0.00036 0.021 15.7 0.4 3 20 368 385 366 389 0.90

11 15 0.021 1.2 10.1 0.4 1 23 394 417 394 417 0.97

12 15 0.00027 0.016 16.1 0.2 2 23 423 445 423 445 0.94

13 15 2.8e-05 0.0016 19.2 4.9 1 23 449 472 449 472 0.98

14 15 3.2e-05 0.0019 19.0 0.4 2 23 479 500 478 500 0.96

15 15 0.0036 0.21 12.5 2.3 1 23 506 528 506 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.55	31	5.7	0.0	2	23	11	33	10	33	0.92
2	15	0.0021	0.12	13.3	0.6	2	23	54	76	53	76	0.95
3	15	0.00071	0.041	14.8	3.2	3	23	83	104	82	104	0.97
4	15	0.0025	0.14	13.0	1.1	1	23	109	132	109	132	0.95
5	15	0.26	15	6.7	0.2	2	23	135	157	134	157	0.94
6	15	0.0009	0.052	14.4	1.0	2	22	164	184	163	184	0.93
7	15	0.0027	0.15	12.9	0.4	1	23	242	265	242	265	0.92
8	15	0.29	17	6.5	0.1	3	23	294	315	292	315	0.94
9	15	0.032	1.8	9.6	0.3	3	23	339	361	337	361	0.96
10	15	0.00036	0.021	15.7	0.4	3	20	368	385	366	389	0.90
11	15	0.021	1.2	10.1	0.4	1	23	394	417	394	417	0.97
12	15	0.00027	0.016	16.1	0.2	2	23	423	445	423	445	0.94
13	15	2.8e-05	0.0016	19.2	4.9	1	23	449	472	449	472	0.98
14	15	3.2e-05	0.0019	19.0	0.4	2	23	479	500	478	500	0.96
15	15	0.0036	0.21	12.5	2.3	1	23	506	528	506	528	0.97

Sequence Information

Coding Sequence: ATGGAAATCAAAATAGATGTTTCTGATGTTACTTGTGAAATTTGCGGGGCTATACTAACATCTTTCGAAGCAGTAATTGATCATTTGAAAGATAAACATAAAATTGAATACGATAGAGATGTAGACATGGCTATCGAAGAGTACAAGCTCGCGGATCTTAGCTGCTTGACGTGTGATGAAAAGTTCACTTACTTTGGCTATTTGGTTTCACATATGAACAACCAGCATCCCAAGAACTGCATTCTCTGCGATAAATGCAACCAAAAGTTCAACAAAAAGAGAGATTTGTTCTCGCACATGAAGAACTATCACAGAGAAGGGGGCTATCAGTGCGATCTGTGCCCACAGACATTTAGCTCGTTGAACATACTGCGGAAACATAGAAGTAACCGTCATCTGACAAGATGCAATGTCTGCCAGCTGAGACTACCCTCTGCAGCGTTGAAACAGAAGCATATGGAACTCGAACACCCCGATGACGGTTCCTTGCAATGTGACAATTGCGATAAAGAGTTTCACACGAAAACCGGACTTAGAATGCATGCGAGGAAATGCAAGGTCGATCTATACGAATTCGCCATCAAAAAGGAAGATTACACAATGGATCTGGACCAGAACTACGAGGATCCAGCAAAAAGGCCGAGCGTGAAGCAAATTCGGGAAAACATTGTGATTGTTATCAACATGTCCACTGCTATTCCGTTTAACTTCTACAAAAACAAGTTCAACTGCTTCTATTGCTCCAAAGACTTCCCAGATTCTGACTCTATGCGCGAACACACAGTTATAGAGCATCCAATTTGCGATGCCAAAGAAAAGTGCATTAAAAAGTGCAGGGAAACTGTCACATGCGTCAAAATTGATGTTTCTACTCTAGCGTGCAAAATCTGCTTCGAGAATATCAGCGATTTGGATAAACTCCTTGATCATTTGATCATCAAGCACAAAGCTAATTACGACAAGTCCATAACAACCTGCTTTCAACCTTATAGACTGATTAAAGATCACATGGCGTGCCCCAATTGCCCGAGCCAAGTGTTCCGATTCTTCGGCACGCTACTCAAGCACATGAATAAAGAACATACTAATAACAATATCATATGTGTGTACTGCGGCGAGACTTTCCGACGGGATCAGAACCTCAGAGTCCATATTTGGCGGCATCATAGAGACGGCAGATTCAAATGCAACATTTGTGATGCGGACTGCAATATCCCTTCACGCCTGTATATGCACATGGCTAGAGCTCACGGTGTTAGAGCGGCTAAATGCCCGAAATGCCCTGAAAGCTTCGCTACTCAGTACCTCCGACAGAAGCATTTGATTGAGGTCCACAATTCCGGACACAAGTGTACTTATTGCGGCAAGTTGTTTACAAGGAACTCGTTTATGCGTGATCATATCAGACGTACGCATTTGAAGGAAAAGAACGTCGAGTGTACCATCTGTGGTATGAAATTCTTCAACAATATACTATTGAGGAGGCATATGGTGAAGCATAGTGGCGAAAAGAACTTCCATTGCGATGTGTGCGGGGAGAGGTTCTTTTGGAGGAAGAGTTTGAGGACTCACATGGCGAGACATAATAAACAACTTCAACCGTTACATATGTAG
Protein Sequence: MEIKIDVSDVTCEICGAILTSFEAVIDHLKDKHKIEYDRDVDMAIEEYKLADLSCLTCDEKFTYFGYLVSHMNNQHPKNCILCDKCNQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFSSLNILRKHRSNRHLTRCNVCQLRLPSAALKQKHMELEHPDDGSLQCDNCDKEFHTKTGLRMHARKCKVDLYEFAIKKEDYTMDLDQNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVIEHPICDAKEKCIKKCRETVTCVKIDVSTLACKICFENISDLDKLLDHLIIKHKANYDKSITTCFQPYRLIKDHMACPNCPSQVFRFFGTLLKHMNKEHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDADCNIPSRLYMHMARAHGVRAAKCPKCPESFATQYLRQKHLIEVHNSGHKCTYCGKLFTRNSFMRDHIRRTHLKEKNVECTICGMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMARHNKQLQPLHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856923;
90% Identity: iTF_01529448;
80% Identity: -