Basic Information

Insect: Epirrhoe alternata
Gene Symbol: -
Assembly: GCA_963565295.1
Location: OY751402.1:1915424-1917301[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.04 2.7 9.2 1.4 1 23 51 73 51 73 0.96

2 15 0.0024 0.16 13.0 0.4 2 23 144 166 143 166 0.94

3 15 0.00024 0.016 16.2 2.2 3 23 173 194 171 194 0.95

4 15 0.0063 0.42 11.7 1.2 1 23 199 222 199 222 0.95

5 15 0.07 4.7 8.4 0.1 2 23 225 247 224 247 0.94

6 15 0.0012 0.083 14.0 1.2 2 21 254 273 253 274 0.93

7 15 0.003 0.2 12.8 0.4 1 23 331 354 331 354 0.92

8 15 0.31 21 6.4 0.1 3 23 383 404 381 404 0.93

9 15 0.012 0.81 10.9 0.1 3 23 428 450 426 450 0.96

10 15 0.00042 0.028 15.4 0.4 3 20 457 474 455 478 0.90

11 15 0.011 0.74 11.0 0.4 1 23 483 506 483 506 0.97

12 15 0.00025 0.017 16.1 0.2 2 23 512 534 511 534 0.93

13 15 3.4e-05 0.0023 18.8 4.7 1 23 538 561 538 561 0.97

14 15 0.057 3.8 8.7 2.2 2 23 568 589 567 589 0.96

15 15 0.0086 0.58 11.3 3.1 1 23 595 617 595 617 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.04	2.7	9.2	1.4	1	23	51	73	51	73	0.96
2	15	0.0024	0.16	13.0	0.4	2	23	144	166	143	166	0.94
3	15	0.00024	0.016	16.2	2.2	3	23	173	194	171	194	0.95
4	15	0.0063	0.42	11.7	1.2	1	23	199	222	199	222	0.95
5	15	0.07	4.7	8.4	0.1	2	23	225	247	224	247	0.94
6	15	0.0012	0.083	14.0	1.2	2	21	254	273	253	274	0.93
7	15	0.003	0.2	12.8	0.4	1	23	331	354	331	354	0.92
8	15	0.31	21	6.4	0.1	3	23	383	404	381	404	0.93
9	15	0.012	0.81	10.9	0.1	3	23	428	450	426	450	0.96
10	15	0.00042	0.028	15.4	0.4	3	20	457	474	455	478	0.90
11	15	0.011	0.74	11.0	0.4	1	23	483	506	483	506	0.97
12	15	0.00025	0.017	16.1	0.2	2	23	512	534	511	534	0.93
13	15	3.4e-05	0.0023	18.8	4.7	1	23	538	561	538	561	0.97
14	15	0.057	3.8	8.7	2.2	2	23	568	589	567	589	0.96
15	15	0.0086	0.58	11.3	3.1	1	23	595	617	595	617	0.97

Sequence Information

Coding Sequence: ATGAGGGTACATTTACAGTACAAAACTAATTTCTTTTCAGATTTAAAACCGCGCCTAAACAAGGGCGAATCATCCTCGATGCGAAGAAGGAGAAATCTTGAGACCGTGTTCAACAATACGTCGATAATACCCTTTAAGTGGAGAGGGAAATATCTATGTTTCTACTGCAGTCAAAATCTTTCCGAATACGCAGATCTAAGGAAACACACGAAATCTCACGGAAAATGCTCGATTCTCGACCATTCCTTGAAAGTTTTAAAAGGCGGAACTAATATGGAAATTAAAATAGACGTTTCGGATATCACTTGTAAAATTTGCGAAGTTATTCTTCCATCATTCGAAGCAGCAATcgaacattttaaaattcataaaatagaTTATGATAAGGAAGTCGATATGGCTATCGAAGAATACAAATTGGCAGATCTTAGTTGTCTTTTATGCGACGAAAAGTTTACTTACTTTGGTTATTTAGTATCGCATATGAATAATATGCATCCGAAGAATTGTATTATCTGTGATAAATGCAACCAAAAGTTCAACAAAAAGAGAGATTTGTTCTCTCATATGAAGAATTATCACAGAGAAGGCGGTTACCAATGCGATCTATGCCCACAGACTTTTAACTCGTTGAATATTTTGAAGAAGCATCGAAGTAATAGACATCTTACAAGGTGCAATATCTGCCAGTTACGTCTGCCTTCCGCAGCTTTGATACAGAAGCACATGGAACTTGAACATCCAGATGACGGCTCTTTGCAATGCGACAACTGCGATAAAGAATTCCACACGAAAACAGGACTTAGAATGCACGAgagaaaatgtaaaataaatctCCTCGATTTCGTGAAGAAAGAGGATTACACAATGGATTTGGATCAGAACTACGAGGACCCAACCAAACGGCCGAGCGTGAAACAAATTAGGGAGAATATAGTGATTGTTATCAACATGTCTACGGCCATACCTTTTAATTTCTACAAAAACAAATTCAATTGCTTCTATTGCTCAAAAGATTTCCCAGATTCAGACTCCATGAGAGAGCATACGGTTGTCGAACACCCTGTTTGCGATATCAAAGATAAAAGCATAAGAAAGTGTAGGGAAACAGTCACATGTGTTAAGATTGATGTATCCACTCTAGATTGCAAAATCTGCTTCGAGTCTATGAGCGATCTCGACAAACTGCTTGATCATTTGATCATCAAACACAAGGCTAACTACGACAAGTCTATAACAACATGCCTGCAGCCTTACAGGTTGATCAAAGATAACATGGCCTGTCCCTACTGTCCATCAGAAGTATTCCGTTTCTTCGGAACTCTTCTCAAACATATGAACAAAGCTCACACGAACAATAATATAATTTGTGTGTACTGCGGTGAAACGTTTCGTCGTGATCAGAATTTACGTGTACACATATGGCGTCATCATAGAGACGGCAGATTCAAATGTAACATTTGCGACGCAGATTGCAGTATACCATCTCGTCTGTACATGCATATGGCGAGAGCGCACGGTGTTAAAGCATCAAAATGCCCGAAATGCCCGGAAAGCTTCGCCACTCAGTACCTACGGCAGAAGCATCTTATCGAAGCACATAATTCTGGCCACAAATGCAGTTACTGTGGGAAACTTTTCACTCGAAACTCGTTTATGCGCGATCATATCAGACGCACACATTTGAAAGAGAAGAATGTGGAGTGCTCTATCTGCTGCATGAAGTTCTTTAATAATATACTTCTGAGAAGGCACATGGTTAAACATAGTGGAGAGAAGAATTTTCATTGCGATGTTTGTGGGGAGAGATTCTTTTGGAGGAAGAGCTTGAGGAGTCATATGACGAGGCATAATAAGCATCTTCAGCCTTTGATGTAG
Protein Sequence: MRVHLQYKTNFFSDLKPRLNKGESSSMRRRRNLETVFNNTSIIPFKWRGKYLCFYCSQNLSEYADLRKHTKSHGKCSILDHSLKVLKGGTNMEIKIDVSDITCKICEVILPSFEAAIEHFKIHKIDYDKEVDMAIEEYKLADLSCLLCDEKFTYFGYLVSHMNNMHPKNCIICDKCNQKFNKKRDLFSHMKNYHREGGYQCDLCPQTFNSLNILKKHRSNRHLTRCNICQLRLPSAALIQKHMELEHPDDGSLQCDNCDKEFHTKTGLRMHERKCKINLLDFVKKEDYTMDLDQNYEDPTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMREHTVVEHPVCDIKDKSIRKCRETVTCVKIDVSTLDCKICFESMSDLDKLLDHLIIKHKANYDKSITTCLQPYRLIKDNMACPYCPSEVFRFFGTLLKHMNKAHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICDADCSIPSRLYMHMARAHGVKASKCPKCPESFATQYLRQKHLIEAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICCMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRSHMTRHNKHLQPLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00856923;
90% Identity: iTF_01529448;
80% Identity: -