Basic Information

Insect: Xanthorhoe spadicearia
Gene Symbol: -
Assembly: GCA_947086425.1
Location: OX352194.1:12507524-12523599[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0089 0.51 11.1 0.3 3 20 161 178 160 182 0.95

2 11 0.04 2.3 9.1 3.0 2 23 222 243 221 243 0.96

3 11 0.017 0.98 10.2 0.4 2 20 317 335 316 337 0.90

4 11 0.00032 0.019 15.6 1.7 1 23 345 368 345 368 0.97

5 11 1.3e-05 0.00075 20.0 1.1 1 23 390 412 390 412 0.98

6 11 7e-07 4e-05 24.0 1.9 1 23 419 441 419 441 0.98

7 11 2.4e-07 1.4e-05 25.5 1.4 3 23 455 475 453 475 0.96

8 11 1.1e-06 6.2e-05 23.4 0.8 1 23 481 503 481 503 0.99

9 11 1.5e-06 8.5e-05 23.0 2.8 2 23 510 531 509 531 0.96

10 11 1.3e-07 7.5e-06 26.3 1.5 1 23 537 559 537 559 0.99

11 11 0.0034 0.19 12.4 0.1 1 23 565 587 565 587 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0089	0.51	11.1	0.3	3	20	161	178	160	182	0.95
2	11	0.04	2.3	9.1	3.0	2	23	222	243	221	243	0.96
3	11	0.017	0.98	10.2	0.4	2	20	317	335	316	337	0.90
4	11	0.00032	0.019	15.6	1.7	1	23	345	368	345	368	0.97
5	11	1.3e-05	0.00075	20.0	1.1	1	23	390	412	390	412	0.98
6	11	7e-07	4e-05	24.0	1.9	1	23	419	441	419	441	0.98
7	11	2.4e-07	1.4e-05	25.5	1.4	3	23	455	475	453	475	0.96
8	11	1.1e-06	6.2e-05	23.4	0.8	1	23	481	503	481	503	0.99
9	11	1.5e-06	8.5e-05	23.0	2.8	2	23	510	531	509	531	0.96
10	11	1.3e-07	7.5e-06	26.3	1.5	1	23	537	559	537	559	0.99
11	11	0.0034	0.19	12.4	0.1	1	23	565	587	565	587	0.97

Sequence Information

Coding Sequence: ATGCCAAAAAGACCTAATCATAGCTCTCTATGTTTATCAAACCCTAATTTCCAGATCCGCAAAGGAGATGGACTGCCCACCACAATTTGTTGTGAATGCAAAGACAAGGCTGAGAAAGCTTTTGATTTCAAAAAGAAGTCTGAGGAGGCCTACAACTCCTTGAAAGGCTTCTACAAGGATGAAAAAAATGTATTTGAGTTTGATGAAGGTTCTGTACAGAAATCCATTGATCTCAAAACTGAAGATTCTCACTTTAGTGATCATGAAGAATATTCCGATGTTGACTTCAGTATGCCTCTCAAGAATGGTCCACCTGATATAAATAACATTGAATTCAAAGTGAAAGTAAAACATGAAGGTAATCGCGATTATTTTGAATGTAAAATGTGTTGTCTGATATTCCAAACACGGGCCAAGTATCAAGAACACAAGAAAAATAAATGTGTTAAAGTTGAATTTGAAGGCCAGAGTGGTGCGCACTGCCCTATTTGTGGTACAAGCTATGACGGCGCAAACAGCCTGTCCAATCATATGTGGCAGTTCCACGCTGATCTCATGGGACCCAAGAAGAGGGGACGACCAAAAAAGGCTATGACCTCGACAATATTGAGTAAATTATCTGAGAATGGCTTCTTTATAAAGACAGTGCAGGGAAAGAAAACAAAATGTGGTTTTTGCAAGGAACAACTTGATACCAAAGAGCATCTGAATTCACACATGTTTCAACACAGCGATGTCAAAGTCTTATGCTGTATTCTTTGCAAAAAAATGTATTTGAAAAAGAAGAAATTTGATGCGCACTCGTGTGTTGAGGATGCGAACAAGAGTGTCGCGAAAAGTGAAAGAAATGCTGGTGCCATTCAAGTGTGCGGCGCATGCAGTGCCGTATTTCTCTCAGAAGGTGATCTCATAAGCCATCATGATGCAGATCATCCGGAACTATCGTTACGATGCAACCATTGCTCCAAGGTATTTGCGTCGGTAAAAACAGCTGCCCGCCATAGGAGCATGTGTAAAGACATTGATAGAGTACACAGATGTTCGACTTGCGGCCTCAAGTTTGCCTACGAGATATCCCTCAACAAGCACATACTCAGATATCACCAGGGAGAGCGGGTATCGGTAGCGCACCAAGGAAAACAACCTAAACCCGCCTCTAATGTACAATATCAATGTGACACTTGCAATAAGATATTTCAACGAAAAGAGGCGCTTGCAAAGCACACCAAACTGCACATGCCGAACCAAAAGTTATTTGAATGTGACATTTGCCAAAGGAAATTCAACAGAAGCGATAATTTGCGTACCCACAAACGCATTCACGACGTGGACCGTCCAAAGCCGCCGACCAACAACCACCTGTGTCTGTACTGTGGCCGGGGCTTCTCAAACTCATCCAATCTCATCGTGCACATGCGCCGGCACACTGGCGAGAAACCATACAAGTGTGACTTTTGTGAGAAAGGCTTCCCTAGATCGTCTGATCTTATGGTTCACAGAAGATCTCATACCGGCGAGAAACCTTGCGTTTGTCGTCTTTGCGGCAAAGCATTCTCCCGCAGCAACAAGTTGTCACGTCACATGCGCGTGCACACCGGCCAGCGACCCTACAAGTGTACTTATTGCGACAAGGCATTCTCGCAGAGCAACGATCTAACGCTACATGTGCGCCGGCACACCGGAGATCGACCCTACATCTGCGAAGTCTGCGGCGATCGCTTCATTCAGGGTACTGCATTGCAGAATCATCGTCGAGCACATGGCCATTTTACCGTGGCACCTCCTACTGGCATTACGAACCAAGTGCAAGCTATCACAACGTACGCGGTAGCTAGCATCACTCATCATGATGACTCACATTTATCTAATACCATCACGTCTATATAG
Protein Sequence: MPKRPNHSSLCLSNPNFQIRKGDGLPTTICCECKDKAEKAFDFKKKSEEAYNSLKGFYKDEKNVFEFDEGSVQKSIDLKTEDSHFSDHEEYSDVDFSMPLKNGPPDINNIEFKVKVKHEGNRDYFECKMCCLIFQTRAKYQEHKKNKCVKVEFEGQSGAHCPICGTSYDGANSLSNHMWQFHADLMGPKKRGRPKKAMTSTILSKLSENGFFIKTVQGKKTKCGFCKEQLDTKEHLNSHMFQHSDVKVLCCILCKKMYLKKKKFDAHSCVEDANKSVAKSERNAGAIQVCGACSAVFLSEGDLISHHDADHPELSLRCNHCSKVFASVKTAARHRSMCKDIDRVHRCSTCGLKFAYEISLNKHILRYHQGERVSVAHQGKQPKPASNVQYQCDTCNKIFQRKEALAKHTKLHMPNQKLFECDICQRKFNRSDNLRTHKRIHDVDRPKPPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFTVAPPTGITNQVQAITTYAVASITHHDDSHLSNTITSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811280;
90% Identity: iTF_01529377; iTF_00267438; iTF_00662439;
80% Identity: iTF_01529377;