Basic Information

Insect: Epirrhoe tristata
Gene Symbol: -
Assembly: GCA_951394285.1
Location: OX596136.1:15643613-15654511[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.01 0.67 11.0 0.3 3 20 193 210 192 214 0.95

2 12 0.00097 0.065 14.2 1.5 2 23 254 275 253 275 0.96

3 12 0.64 43 5.3 0.0 2 23 346 368 345 368 0.89

4 12 0.066 4.5 8.4 0.4 2 20 374 392 373 394 0.90

5 12 0.00036 0.024 15.5 1.7 1 23 402 425 402 425 0.97

6 12 1.5e-05 0.00099 19.9 1.1 1 23 447 469 447 469 0.98

7 12 7.8e-07 5.2e-05 23.9 1.9 1 23 476 498 476 498 0.98

8 12 2.7e-07 1.8e-05 25.3 1.4 3 23 512 532 510 532 0.96

9 12 1.2e-06 8.2e-05 23.3 0.8 1 23 538 560 538 560 0.99

10 12 1.7e-06 0.00011 22.9 2.8 2 23 567 588 566 588 0.96

11 12 1.5e-07 9.8e-06 26.2 1.5 1 23 594 616 594 616 0.99

12 12 0.0038 0.26 12.3 0.1 1 23 622 644 622 644 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.01	0.67	11.0	0.3	3	20	193	210	192	214	0.95
2	12	0.00097	0.065	14.2	1.5	2	23	254	275	253	275	0.96
3	12	0.64	43	5.3	0.0	2	23	346	368	345	368	0.89
4	12	0.066	4.5	8.4	0.4	2	20	374	392	373	394	0.90
5	12	0.00036	0.024	15.5	1.7	1	23	402	425	402	425	0.97
6	12	1.5e-05	0.00099	19.9	1.1	1	23	447	469	447	469	0.98
7	12	7.8e-07	5.2e-05	23.9	1.9	1	23	476	498	476	498	0.98
8	12	2.7e-07	1.8e-05	25.3	1.4	3	23	512	532	510	532	0.96
9	12	1.2e-06	8.2e-05	23.3	0.8	1	23	538	560	538	560	0.99
10	12	1.7e-06	0.00011	22.9	2.8	2	23	567	588	566	588	0.96
11	12	1.5e-07	9.8e-06	26.2	1.5	1	23	594	616	594	616	0.99
12	12	0.0038	0.26	12.3	0.1	1	23	622	644	622	644	0.97

Sequence Information

Coding Sequence: aTGGCATCAACTAATGATAAAATAGAAATCAAGATTGAAAAGTTGTGTCGAACATGTTTATCGAAAGACAATGAACTGAATTCTCTATTTGATGTGATTGTTGGAGAAGTGTCTCTAGATTTCTTAGTGACGGCTATTACTGGACTGAAGATTCGCAAAGGAGATGGACTGCCTACCACAATATGTTGCGAATGCAAAGACAAGGCTGAAAAAGCTTTTGACTTTAAAAAGAAGTCCGAAGAGGCTTATAACTCCTTGAAAGGCTTTTACAAAGatgaaaaaagtatatttgAATATGATGATGGTTCTAAACAGAAATCCCTTGGCTTTAAGACTGAAGACTCTCAGTTTAGTGACCACGATGATTTTTCCGATGTCGATTATAATATGCCCCTGAAGGATGCTCCTGATATTGATAATATTGaaaTCAAGGTGAAAGTGAAACATGAAAGCACCGATCGAgagttttttgaatgtaaaaCATGCTGCCTTATATTCCAAACTCGGGCTAAGTATCAAGAacataagaaaattaaatgtgTTAAAGttgAATATGAAGATCAGAGTGGGGCACATTGCCCTATTTGTGGCACAAGCTATGACGGCGCAAACAGTCTTTCAAACCACATGTGGCAGTTTCATGCTGATCTCATGGGACCTAAGAAGAGGGGAAGACCAAAAAAAGCTATGACCTCGactatACTGAGCAAATTATCTGAGAATGGGTTCTTTATAAAGACGGTTCACGGAAAGAAAACTAAATGCGGTTTTTGCAAGGAGCAATTTGATACCAAAGAGGATCTAAATTCCCACATGTTTCAACATAGTGATGTCAAAGTCTTGTGCTGTATTCAATGTAAGAAAATGTATCTGAAAAAGAAGAAGTTTGATATGCACCTGTGTGCGGATGATACAACCAAGACTGCATCGAAAGGCGAacgaGTTTCTGATGCGAGTAAGAAAACGTTTGCAACGGAAATGCTTTTACAAGAGCTTTTGGACTCAGATTGGGAAGCGaatGCTGGTGCGATTCAAGTTTGCGGCGCGTGTAGTGCCGTGTTTATCTCTGAAGGTGATCTCATAAGTCATCACGATTTGGAACATCCAGAACTTTCGTTACGATGTAATCATTGCTCCAAGATATTTGCTTCAGTAAAAACTGCTGCCCGTCACAGGTCCCTGTGCAAAGACATTGATAGAGTACACAGATGTTCCACTTGTGGTCTCAAGTTTGCATACGAAATATCCCTCAACAAACATATACTCAGATACCATCAGGGAGAAAGGGTATCTGTAGCACATCAAGGCAAACAACCTAAACCCGCATCAAATTTACAGTATCAATGTGACACTTGTAATAAGATATTTCAAAGAAAAGAGGCGCTTGCAAAGCACACCAAACTGCACATGCCCAACCAAAAGCTGTTTGAATGTGATATTTGCCAAAGGAAATTCAACAGGAGCGACAATTTACGTACACACAAACGCATTCACGACGCGGACCGGCCGAAGCCTCCGACCAACAACCACCTATGTCTGTACTGTGGCCGAGGCTTTTCCAACTCTTCAAACCTTATCGTGCATATGCGACGGCATACTGGCGAGAAGCCATACAAGTgtgatttttgtgaaaaagGTTTTCCAAGATCTTCAGATCTTATGGTTCACAGGAGATCACATACCGGCGAGAAACCTTGCGTCTGTCGTCTTTGTGGCAAAGCGTTCTCCCGCAGCAACAAACTATCGCGTCACATGCGCGTGCACACCGGCCAGCGACCTTATAAATGCACGTACTGCGACAAGGCGTTCTCGCAAAGCAACGACCTGACGCTGCACGTGCGGCGGCACACCGGCGACCGGCCCTACATCTGCGAGGTCTGCGGGGATCGCTTTATTCAGggcACTGCATTGCAGAACCATCGTCGAGCACATGGCCATTTTAGCGTGCCTCCTCCCACTGGCATTACAAACCAAGTGCAGGCTATCACATACGCGGTGACAAATGTCACACATCACGATGACTCGCATTTATCTAACACCATCACGTCTATCTAA
Protein Sequence: MASTNDKIEIKIEKLCRTCLSKDNELNSLFDVIVGEVSLDFLVTAITGLKIRKGDGLPTTICCECKDKAEKAFDFKKKSEEAYNSLKGFYKDEKSIFEYDDGSKQKSLGFKTEDSQFSDHDDFSDVDYNMPLKDAPDIDNIEIKVKVKHESTDREFFECKTCCLIFQTRAKYQEHKKIKCVKVEYEDQSGAHCPICGTSYDGANSLSNHMWQFHADLMGPKKRGRPKKAMTSTILSKLSENGFFIKTVHGKKTKCGFCKEQFDTKEDLNSHMFQHSDVKVLCCIQCKKMYLKKKKFDMHLCADDTTKTASKGERVSDASKKTFATEMLLQELLDSDWEANAGAIQVCGACSAVFISEGDLISHHDLEHPELSLRCNHCSKIFASVKTAARHRSLCKDIDRVHRCSTCGLKFAYEISLNKHILRYHQGERVSVAHQGKQPKPASNLQYQCDTCNKIFQRKEALAKHTKLHMPNQKLFECDICQRKFNRSDNLRTHKRIHDADRPKPPTNNHLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCEKGFPRSSDLMVHRRSHTGEKPCVCRLCGKAFSRSNKLSRHMRVHTGQRPYKCTYCDKAFSQSNDLTLHVRRHTGDRPYICEVCGDRFIQGTALQNHRRAHGHFSVPPPTGITNQVQAITYAVTNVTHHDDSHLSNTITSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00811280;
90% Identity: iTF_01529418;
80% Identity: -