Wsmi002469.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:27578996-27580936[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00018 1.1 11.1 0.2 18 48 52 82 49 87 0.85 2 10 2.3e-05 0.14 14.0 0.0 18 48 182 212 179 215 0.89 3 10 0.019 1.2e+02 4.6 0.1 9 47 226 262 219 266 0.76 4 10 0.032 1.9e+02 4.0 0.1 20 44 268 292 264 304 0.87 5 10 1.6 9.5e+03 -1.5 0.1 22 33 325 336 320 349 0.73 6 10 2.9 1.8e+04 -2.3 0.0 21 43 352 374 345 378 0.76 7 10 0.00098 6 8.8 0.0 21 44 380 403 372 412 0.88 8 10 0.2 1.2e+03 1.4 0.1 20 43 435 458 419 467 0.77 9 10 0.2 1.2e+03 1.4 0.4 21 43 464 486 456 496 0.70 10 10 0.27 1.7e+03 1.0 0.1 14 36 484 507 478 520 0.69
Sequence Information
- Coding Sequence
- ATGGAAGAATCCACTCAGATCAAAGTAGAAGAGCTTGTAATACTCGACACAAAGGatgagaaaactttttttgctaACAGCGAACTGTGTTCCGATGAAACCAACGTCCTAAGGAAAGTTTCTACGGATACTGATCTCCTAGACCATATGCCCCGGCACAGTAATGAGCGACCCTTTAAATGCACAATCTGTAGCAGAACGTTTAAGAATTCCAGAGGATTGAGGTTTCATGAAAACAAATACCACAAGGTCGATCCGTCCTCAAGTAATTGGAACAGTTCGAAATCGTGGAAGGGCAACGGGAAACTACTTTTCGCATGTGATATCTGCAGCAGAACATGCGTCACACCGGAGAGTTTGCACCACCATATGAGTGCTCATACAGGAGACCGGAACTTCCAGTGTGACATATGCGGACGACGATTCAGCGTTAAAAGACATATATCGACTCACATGAGAATACACCGCACAGATTGCAGGCATAAGTGCTCGGTTTGCAATAAAAAATTCACAAGTAATTTCAGTCTCGCAGATCATATGCTCCGTCACAGCGATGAGCGTCCCTTCAAATGTGACATCTGCGACACATTAATCAAGAGATCGGCAGATTTAATGCGTCATATGCAGAATGTCCATAATGTCGATCTCTTCTCAAGCAATGCGAAGAGTTTGGAACCAAGCCAAACTGATAAAAGCCGAAGCGAAGGTTCAGGGGAATACAACTGCGACATATGCGGGAAACAGTATACAACAAAAAATTCTCTTCGCTTACATCAGGAACTTCATCAGAGCACTGCAGTAAGATCCGAACGGAAATTTCAATGTGACATCTGTAGCGAAGCATTCACACAAGAATCAACATTAGCGCGACACATTGCAGATCACAGCACAAAGCGACACCAGTGTAAGATTTGTGGAAAAGGATATGCTCGCGCACACTGGCTCCTACTGCATATGACTTCTCATACAGAGGAAATACCTATTAATTGTGATATTTGTGGTATATCATGTGAGTCAGCTAAAGCTTTGATAGAACATAAAGCAACACACACCTCAAAGAGGTCGTATAAATGCAAAgtttgtggaaaaggattttcAGCAGTTCGGAGGCTCAGGGAGCATTCGATTTGCCATACTGAAGAGCGGCCTTTTAAATGTGATATTTGCGGGTCTGTATATAAGTCGTCTGATAGTTTGAGAGAGCATCAAAAAACGCACGCCCTTTGGAACCCATATAAATGCGATATTTGTGGGAGGAGCTGTTCGGGTCCTGGACGGCTCGAAATGCATATGACTAGTCATACTGAAGAACGACCTTTTAATTGCGACATTTGCGGGTCCGCATATAAGTCAGTTGCTAGTTTGAAAACACATCAGAAAACGCACATCTCTGAGAGACCACATAAATGCGAAATCTGCGGAAGAGGCTTTCTTCTTCCTTCCCAGGTAAAGCGGCACATGCGTAGTCATTCTGACGAACGGCCTTTCAAATGCAACATGTGCGACGGATCATATAAGTCAACTTTTATGCTGAAAATACATAGAAAAAAACACCATGACGGGTGTGACCCCTGA
- Protein Sequence
- MEESTQIKVEELVILDTKDEKTFFANSELCSDETNVLRKVSTDTDLLDHMPRHSNERPFKCTICSRTFKNSRGLRFHENKYHKVDPSSSNWNSSKSWKGNGKLLFACDICSRTCVTPESLHHHMSAHTGDRNFQCDICGRRFSVKRHISTHMRIHRTDCRHKCSVCNKKFTSNFSLADHMLRHSDERPFKCDICDTLIKRSADLMRHMQNVHNVDLFSSNAKSLEPSQTDKSRSEGSGEYNCDICGKQYTTKNSLRLHQELHQSTAVRSERKFQCDICSEAFTQESTLARHIADHSTKRHQCKICGKGYARAHWLLLHMTSHTEEIPINCDICGISCESAKALIEHKATHTSKRSYKCKVCGKGFSAVRRLREHSICHTEERPFKCDICGSVYKSSDSLREHQKTHALWNPYKCDICGRSCSGPGRLEMHMTSHTEERPFNCDICGSAYKSVASLKTHQKTHISERPHKCEICGRGFLLPSQVKRHMRSHSDERPFKCNMCDGSYKSTFMLKIHRKKHHDGCDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01525080;
- 90% Identity
- iTF_01525080;
- 80% Identity
- iTF_01525080;