Wsmi006249.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- LRRFIP2
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:74658877-74667368[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.32 2e+04 -3.7 0.2 25 47 122 144 121 161 0.59 2 3 3.8e-110 2.3e-105 353.9 36.6 1 299 184 475 184 476 0.90 3 3 0.056 3.5e+03 -1.3 2.2 210 244 495 528 479 549 0.59
Sequence Information
- Coding Sequence
- ATGAGCAGTGATATCAAATTGAGTATTAGTGAAGACGGATATAGAATGCACGGAACCGGTCAGCGGTTTTCATTGGTCTCAGATGAGGAAGACGACGAGCAGGGTGAATTCTTTAGTTTCGAAGAACCAAACGATCTAGATCCGCTGACAGCGGAGTTGAAAATCCGTGAATCAAATGAAGAGCTGAACGTGGATATTAACCGAAATGATCTGAGCGGCAAGGGGGGTGAACAAAAATTGCATGAAGCTGTTAATGAAGATAGTGATTTGATTATAGATATAAGTAACGGTTTCAGCGATAGTGTTTTCGACGGTGATGATTCACTGATTGATAACCGTCAGTTAGTTGAACCGGTAGTGATCAGAGAGCAGGATGAGGTTGACCAAAGCTACGATAGTTACGCGGACAGCCAAAAATCCGATCAGGATCATCATTCGTTCGAGCCGCACCGACAGTATCATCGCCTATCGGTATGTCACACCGGAGACGAGTTTAGCTCCGACGAGGATGAAGCGTTtgttgagctcctggaaaaggcTAATCACATAgcGGAGGCTCGACTGGCAGCTCGACGGCAAGCACGTGCAGAAGCACGCGAAATTCGTATGCGTGAGCTTGAGCGGCAACAAAAAGAGCTGGAACAAAATGCTGACCGTGTGTTCGATCTGCAGCAGCAGTCCGCCGGCTTGTCGACGCCGGACTCGTCATTGGGGACTCGATCCACTCGCCTGACCGTCAACAGTCCCGCAGTTCGAGGAAGTTCACTGTCCTCCCGAAGGAGTAGCGAAGATTCCCTGGAGGAAGAAGGCCGAAGTTTGCGGGACCTACGGCACGAGCTAAAGGATGTAGAAGAACGTTTTCGCAAGGCCATGGTTGCCAACGCCCAGTTGGACAATGAACGTGCCTCGCAAAGCTACCAAATTCAGCTACTAAAAGATAAGCTGGAGGAAATGGAAGAATCGCACGCACAACTACAGCGAGAGTACAAGGAAAAATGTCGGGATCACGACAGCTTGAAACGAGCTAATGACAAACTATCTGAGGAGCTGAAACTAACTCAAGGGCAGCTTCAGGAACGAGACTCGCTAATCGAAGAACAAGGAATGGTAATCGTGACAGTAGAAAACGAGGATGGTTCTGACGCAAGACGTGCACTAGTCACAGTGGAGAACGCACAGCTGCTAGGATCCGTGCAAGGCTCTTTGGATGTAAGGCTCAAAAAATTTACCGAGGAAAAACACGAACTGCAAAACGAAGTGCAGACACTGCAGCAGCAACTGAAAGACATCAAAACCAAGGGCAGAAAGTATGGCTCTATCAACGGAGCGTTGGACGATGAGGACTACGAGGACGCACAAAGAGAAGCCAATAAACTAATCACTGACTACAAATACAAGCTACAAAAAGCAGAGCAGGAAATTGCCAACCTGCAGGCCAGTTTGGCTCGATCCGAGACGCAGGTGATTCGATACAGAAGTACCGCTGAGGCGGCAGAAAAAGCTGAAAGCGATCTTAAAATTGAGAGGAGAAAGCTGCAACGAGAGAATCGCGAAGCCATGGACCGCCTGGAAGAGTTGGAGACCTGCAACAACCACCTGTTGAAAAGACTCGATAAACTGAAGAACGCAAAAAGTGCACTTTTGAAGGACCTCTGA
- Protein Sequence
- MSSDIKLSISEDGYRMHGTGQRFSLVSDEEDDEQGEFFSFEEPNDLDPLTAELKIRESNEELNVDINRNDLSGKGGEQKLHEAVNEDSDLIIDISNGFSDSVFDGDDSLIDNRQLVEPVVIREQDEVDQSYDSYADSQKSDQDHHSFEPHRQYHRLSVCHTGDEFSSDEDEAFVELLEKANHIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDLQQQSAGLSTPDSSLGTRSTRLTVNSPAVRGSSLSSRRSSEDSLEEEGRSLRDLRHELKDVEERFRKAMVANAQLDNERASQSYQIQLLKDKLEEMEESHAQLQREYKEKCRDHDSLKRANDKLSEELKLTQGQLQERDSLIEEQGMVIVTVENEDGSDARRALVTVENAQLLGSVQGSLDVRLKKFTEEKHELQNEVQTLQQQLKDIKTKGRKYGSINGALDDEDYEDAQREANKLITDYKYKLQKAEQEIANLQASLARSETQVIRYRSTAEAAEKAESDLKIERRKLQRENREAMDRLEELETCNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948752;
- 90% Identity
- -
- 80% Identity
- -