Wsmi056062.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- JARQTK010000015.1:1-14509[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 5.4e-06 27.7 0.1 3 43 13 52 11 53 0.87
Sequence Information
- Coding Sequence
- ATGAGTAACGCGGCAGTGAAACGTGGTGAACGGGAGCAGGCGATCAAGTTGGCGATTATTGCCATTAAGTTTGGCAAGTCGTTACGGGCAGCTGCTGGAGAGTATGGTATACCCCGTACCACCTTGCTTCGCCACAAGCGGTTAAACGCTGGCCTGATGGTGCAAGCGGACCCGCTACATCCTACGATATCGATGGaggatgtgcaaatttgtaagCGCGGAAGACCACCGTTGTTCCCCGAGGAACCAGAACGGGCATTCGAAAAGTATTGCTTGCTATGCTCGGACAAGTTCTTCGGTCTAACATCCAGAGACATTCGTGTGCTTGCACCACAATTCGCGAACCAGCTGGGGATTCCGGTTCCCGACAATTGGATCGCGAACGCAAAGGCAGGCCCTGTTTGGTTTCGGAACTTTCTGCGCCGAAGGCCGAACCTGTCGATGCGTTCACCCGAGGCGACCAGCATAGCCAGAGTCTCTGCTTTTAATCCCACAAATGTGGGCAAGTTTTTCGATCTTCTACGCACAGTAGCCGAGAATATAACGTTCGAACCAAATTCCATCTGGAATCTGGACGAGACTGGAGTGACAACAGTTCAGAAACCTCAACGAGTTGCTAGTCGCCGTGGAGTCAAACGTGTTGGTCGAGTAACTTCGGCCGATCGGGGCCCGTTGGTTACGATGGTACTTGCGGTTTCCGCCACTGGCAATAAAATGccaccatttttcgtttttcctcgAAAACGTTTCCATCCACACTTTCTGGATGGTGGTCCAACGGGATGCGCTGGAGCGGTGAGTAATACAGGGTGGATGAATGCAGATATTTATCTGGATGTTCTCCGACACTTTAAAGCATTTACGCGAGTGTCCAAAGAAAACCCGCTTTTGTTGATTGTGGACAACCACGGTTCACACAGAAGTCTACCTGCAATCGAGTTTTGCAGGGATAATGGCATTCACCTACTTACAATACCACCCCATTGCTCTCACCGCTTACAACCCTTGGACGTGAGTGTGTTTTCGCCGTTCAAACACGCAATGAATGTGCTGTGCGACGAATGGACATACAGGCATCCCGGAAAGCCGATGTCTATTTTTGACCTTCCGGCTATCATCGACAGCGCTCTCGAACGGAGTGCCACGGAGCGAAACATCAAGGCCGGGTTCCGGGCATCAGGTATTTGGCCCTTCAACCCGGATGTATTCACTGCATTGGATTATGCTCCATCATCAGTGACAGGACCTTCCTTGGTTGACGAAATAATACCAGGATCACTGCTGGACACTCTTTGCAGAATCAGACCAATCCCGCGGGCACCACCGCGTGCTACAGGCAGACGAGGACGAAAACCTGGACGAGCTGCTATACTGACGGACCCCGCTGAAATCGCTCTGAtgGAACAAAACATACAAGCGAAGGGAGTAGCCCGACCCACTCAACGGCGAGTAGGCCGACCACGTAAAGCAACTGTGCAGTTTCATAGCCTCGTTGGTGCACCACCAAGACCAACGATAGTGGTGATAAAGAGACCACCTGGAAGACCCCGCAAATCACAGGCTGCAGCggataagaggcccgttggccgaccccGCAAGCCTCCAGTCGTTATACTAAAAAGGCCTGTTGGCCGACCTCCAAA
- Protein Sequence
- MSNAAVKRGEREQAIKLAIIAIKFGKSLRAAAGEYGIPRTTLLRHKRLNAGLMVQADPLHPTISMEDVQICKRGRPPLFPEEPERAFEKYCLLCSDKFFGLTSRDIRVLAPQFANQLGIPVPDNWIANAKAGPVWFRNFLRRRPNLSMRSPEATSIARVSAFNPTNVGKFFDLLRTVAENITFEPNSIWNLDETGVTTVQKPQRVASRRGVKRVGRVTSADRGPLVTMVLAVSATGNKMPPFFVFPRKRFHPHFLDGGPTGCAGAVSNTGWMNADIYLDVLRHFKAFTRVSKENPLLLIVDNHGSHRSLPAIEFCRDNGIHLLTIPPHCSHRLQPLDVSVFSPFKHAMNVLCDEWTYRHPGKPMSIFDLPAIIDSALERSATERNIKAGFRASGIWPFNPDVFTALDYAPSSVTGPSLVDEIIPGSLLDTLCRIRPIPRAPPRATGRRGRKPGRAAILTDPAEIALMEQNIQAKGVARPTQRRVGRPRKATVQFHSLVGAPPRPTIVVIKRPPGRPRKSQAAADKRPVGRPRKPPVVILKRPVGRPP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524705; iTF_01524706; iTF_01524659; iTF_01524660; iTF_01524674; iTF_01524675; iTF_01524678; iTF_01524745; iTF_01524652; iTF_01524684; iTF_01524685; iTF_01524686; iTF_01524688; iTF_01524657; iTF_01524689; iTF_01524690; iTF_01524691; iTF_01524723; iTF_01524692; iTF_01524693; iTF_01524725; iTF_01524694; iTF_01524696; iTF_01524676; iTF_01524677; iTF_01524709; iTF_01524679; iTF_01524680; iTF_01524681; iTF_01524682; iTF_01524695; iTF_01524727; iTF_01524697; iTF_01524698; iTF_01524668; iTF_01524700; iTF_01524699; iTF_01524701; iTF_01524702; iTF_01524703; iTF_01524640; iTF_01524672; iTF_01524704;
- 90% Identity
- iTF_01524676;
- 80% Identity
- -