Basic Information

Insect: Wyeomyia smithii
Gene Symbol: -
Assembly: GCA_029784165.1
Location: CM056644.1:107010640-107017906[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.4e-08 5.3e-06 27.8 0.1 3 43 13 52 11 53 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.4e-08	5.3e-06	27.8	0.1	3	43	13	52	11	53	0.87

Sequence Information

Coding Sequence: ATGAGTAACGCGGCAGTGAAACGTGGTGAACGGGAGCAGGCGATCAAGTTGGCGATTATTGCCATTAAGTTTGGCAAGTCGTTACGGGCAGCTGCTGGAGAGTATGGTATACCCCGTACCACCTTGCTTCGCCACAAGCGGTTAAACGCTGGCCTGATGGTGCAAGCGGACCCGCTACATCCTACGATATCGATGGAGGATGTGCAAAGTTGTAAGCGCGGAAGACCACCGTTGTTCCCCGAGGAACCAGAACGGGCATTCGAAAAGTATTGCTTGCTATGCTCGGACAAGTTCTTCGGTCTAACATCCAGAGACATTCGTGTGCTTGCACCACAATTCGCGAACCAGCTGGGGATTCCGGTTCCCGACAATTGGATCGCGAACGCAAAGGCAGGCCCTGTTTGGTTTCGGAACTTTCTGCGCCGAAGGCCGAACCTGTCAATGCGTTCACCCGAGGCGACCAGCATAGCCAGAGTCTCTGCTTTTAATCCCACAAATGTGGGCAAGTTTTTCGATCTTCTACGCACAGTAGCCGAGAATATAACGTTCGAACCAAATTCCATCTGGAATCTGGACGAGACTGGAGTGACAACAGTTCAGAAACCTCAACGAGTTGCTAGTCGCCGTGGAGTCAAACGTGTTGGTCGAGTAACTTCGGCCGATCGGGGCCCGTTGGTTACGATGGTACTTGCGGTTTCCGCCACTGGCAATAAAATGccaccatttttcgtttttcctcgAAAACGTTTCCATCCACACTTTCTGGATGGTGGTCCAACGGGATGCGCTGGAGCGGTGAGCAATACAGGGTGGATGAATGCAGATATTTATCTGGATGTTCTCCGACACTTTAAAGCATTTACGCGAGTGTCCAAAGAAAACCCGCTTTTGTTGATTGTGGACAACCACGGTTCACACAGAAGTCTACCTGCAATCGAGTTTTGCAGGGATAATGGCATTCACCTACTTACAATACCACCCCATTGCTCTCACCGCTTACAACCCTTGGACGTGAGTGTGTTTTCGCCGTTCAAGCACGCAATAAATGTGCTGTGCGACGAATGGACATACAGGCATCCCGGAAAGCCGATGTCTATTTTTGACCTTCCGGCTATCATCGACAGCGCTCTCGAACGGAGTGCCACGGAGCGAAACATCAAGGCCGGGTTCCGGGCACCAGGTATTTGGCCCTTCAACCCGGATGTATTCACTGCATTGGATTATGCTCCATCCTCAGTGACAGGACCTTCCTTGGTTGACGAAATAATACCAGGATCACTGCTGGACACTCTATGCAGAATCAGACCAATCCCGCGGGCACCACCGCGTGCTACAGGCAGACGAGGACGAAAACCTGGACGAGCTGCTATACTGACGGACCCCGCTGAAATCGCTCTGAtgGAACAAATCGTACAAGCGAAGGGAGTAGCCCGACCCACTCAACGGCGAGTAGGCCGACCACGTAAAGCAACTGTGCAGTTTCATAGCCTCAACGCTATCAGTAGTCAGACGTTGATCCCGCCCGGTCGGACCCGGTCCAGCGGCGGTGTGGCGGCCGGCCGGTTCCCCGGTTCGGTTCGCTTGCTCGCCGTGTGGTGCTCGGTGCTTCCGGCCGgcggtgtagtgtga
Protein Sequence: MSNAAVKRGEREQAIKLAIIAIKFGKSLRAAAGEYGIPRTTLLRHKRLNAGLMVQADPLHPTISMEDVQSCKRGRPPLFPEEPERAFEKYCLLCSDKFFGLTSRDIRVLAPQFANQLGIPVPDNWIANAKAGPVWFRNFLRRRPNLSMRSPEATSIARVSAFNPTNVGKFFDLLRTVAENITFEPNSIWNLDETGVTTVQKPQRVASRRGVKRVGRVTSADRGPLVTMVLAVSATGNKMPPFFVFPRKRFHPHFLDGGPTGCAGAVSNTGWMNADIYLDVLRHFKAFTRVSKENPLLLIVDNHGSHRSLPAIEFCRDNGIHLLTIPPHCSHRLQPLDVSVFSPFKHAINVLCDEWTYRHPGKPMSIFDLPAIIDSALERSATERNIKAGFRAPGIWPFNPDVFTALDYAPSSVTGPSLVDEIIPGSLLDTLCRIRPIPRAPPRATGRRGRKPGRAAILTDPAEIALMEQIVQAKGVARPTQRRVGRPRKATVQFHSLNAISSQTLIPPGRTRSSGGVAAGRFPGSVRLLAVWCSVLPAGGVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01524683;
90% Identity: iTF_01524678; iTF_01524679; iTF_01524680; iTF_01524681; iTF_01524682; iTF_01524696; iTF_01524673; iTF_01524674; iTF_01524706; iTF_01524705; iTF_01524713; iTF_01524687; iTF_01524720; iTF_01524659; iTF_01524683; iTF_01524652; iTF_01524684; iTF_01524690; iTF_01524691; iTF_01524660; iTF_01524692; iTF_01524675; iTF_01524657; iTF_01524693; iTF_01524725; iTF_01524727; iTF_01524697; iTF_01524698; iTF_01524668; iTF_01524700; iTF_01524699; iTF_01524701; iTF_01524704; iTF_01524640;
80% Identity: -