Wsmi009057.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:107027786-107033649[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-08 6.5e-06 27.5 0.1 3 43 13 52 11 53 0.87
Sequence Information
- Coding Sequence
- ATGAGTAACGCGGCAGTGAAACGTGGTGAACGGGAGCAGGCGATCAAGTTGGCGATTATTGCCATTAAGTTTGGCAAGTCGTTACGCGCAGCTGCTGGAGAGTATGGTATACCCCGTACCACCTTGCTTCGCCACAAGCGGTTAAACGCTGGCCTGATGGTGCAAGCGGACCCGCTACATCCTACGATATCGATGGaggatgtgcaaatttgtaagCGCGGAAGACCACCGTTGTTCCCCGAGGAACCAGAACGGGCATTCGAAAAGTATTGCTTGCTATGCTCGGACAAGTTCTTCGGTCTAACATCCAGAGACATTCGTGTGCTTGCACCACAATTCGCGAACCAGCTGGGGATTCCGGTTCCCGACAATTGGATCGCGAACGCAAAGGCAGGCCCTGTTTGGTTTCGGAACTTTCTGCGCCGAAGGCCGAACCTGTCGATGCGTTCACCCGAGGCGACCAGCATAGCCAGAGTCTCTGCTTTTAATCCCACAAATGTGGGCAAGTTTTTCGATCTTCTACGCACAGTAGCCGAGAATATAACGTTCGAACCAAATTCCATCTGGAATCTGGACGAGACTGGAGTGACAACAGTTCAGAAACCTCAACGAGTTGCTAGTCGCCGTGGAGTCAAACGTGTTGGTCGAGTAACTTCGGCCGATCGGGGCCCGTTGGTTACGATGGTACTTGCGGTTTCCGCCACTGGCAATAAAATGccaccatttttcgtttttcctcgAAAACGTTTCCATCCACACTTTCTGGATGGTGGTCCAACGGGATGCGCTGGAGCGGTGAGCAATACAGGGTGGATGAATGCAGATATTTATCTGGATGTTCTCCGACACTTTAAAGCATTTACGCGAGTGTCCAAAGAAAACCCGCTTTTGTTGATTGTGGACAACCACGGTTCACACAGAAGTCTACCTGCAATCGAGTTTTGCAGGGATAATGGCATTCACCTACTTACAATACCACCCCATTGCTCTCACCGCTTACAACCCTTGGACGTGAGTGTGTTTTCGCCGTTCAAGCACGCAATGAATGTGCTGTGCGACGAATGGACATACAGGCATCCCGGAAAGCCGATGTCTATTTTTGACCTTCCGGCTATCATCGACAGCGCTCTCGAACGGAGTGCCACGGAGCGAAACATCAAGGCCGGGTTCCGGGCATCAGGTATTTGGCCCTTCAACCCGGATGTATTCACTGCATTGGATTATGCTCCATCATCAGTGACAGGACCTTCCTTGGTTGACGAAATAATACCAGGATCACTGCTGGACACTCTATGCAGAATCAGACCAATCCCGCGGGCACCACCGCGTGCTACAGGCAGACGAGGACGAAAACCTGGACGAGCTGCTATACTGACGGACCCCGCTGAAATCGCTCTGAtgGAACAAAACATACAAGCGAAGGGAGTAGCCCGACCCACTCAACGGCGAGTAGGCCGACCACGTAAAGCAACTGTGCAGTTTCATAGCCTCGCGGCGGCGGACAGTTCGGCGTTTGGTCTCTTCGCTGTTTGCTGTCCACCGCATACCACCGttcgtccgtccgtccgtccccGTGTTATAGTTTCGGATCGGATGCGAACTAGAGAGCGAACGAGAATACGATGGAAAAGCATTGCAGTGAGGTTGTTCGGAGCGACATCCACCACCACCAGAGCGCGAAGCGAAGGGAGTGGTACGACGCACACAAGGCCCGCTATCGCTAGGCGATCGTTTAGCGACGGCGAGTGCTGGCATCATTGCACCCATTTGGGAGAGAGCGCGCGCGTTTCCGCGAAGCCGGACGCCGCGCAATCGACCGGGGGTGGGCCGCACATTTGTGAGCACACACCCGCACGCACGTACGTGAGTGATGATGATGAATTCTGGTTGATCCTACCAGTAATATACGCTTGTCTCAAAGGTTAA
- Protein Sequence
- MSNAAVKRGEREQAIKLAIIAIKFGKSLRAAAGEYGIPRTTLLRHKRLNAGLMVQADPLHPTISMEDVQICKRGRPPLFPEEPERAFEKYCLLCSDKFFGLTSRDIRVLAPQFANQLGIPVPDNWIANAKAGPVWFRNFLRRRPNLSMRSPEATSIARVSAFNPTNVGKFFDLLRTVAENITFEPNSIWNLDETGVTTVQKPQRVASRRGVKRVGRVTSADRGPLVTMVLAVSATGNKMPPFFVFPRKRFHPHFLDGGPTGCAGAVSNTGWMNADIYLDVLRHFKAFTRVSKENPLLLIVDNHGSHRSLPAIEFCRDNGIHLLTIPPHCSHRLQPLDVSVFSPFKHAMNVLCDEWTYRHPGKPMSIFDLPAIIDSALERSATERNIKAGFRASGIWPFNPDVFTALDYAPSSVTGPSLVDEIIPGSLLDTLCRIRPIPRAPPRATGRRGRKPGRAAILTDPAEIALMEQNIQAKGVARPTQRRVGRPRKATVQFHSLAAADSSAFGLFAVCCPPHTTVRPSVRPRVIVSDRMRTRERTRIRWKSIAVRLFGATSTTTRARSEGSGTTHTRPAIARRSFSDGECWHHCTHLGESARVSAKPDAAQSTGGGPHICEHTPARTYVSDDDEFWLILPVIYACLKG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524683;
- 90% Identity
- iTF_01524709; iTF_01524686; iTF_01524688; iTF_01524689; iTF_01524702; iTF_01524677; iTF_01524694;
- 80% Identity
- -