Vbom047852.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422141.1:200589768-200591527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.81 3.4e+02 4.3 1.6 1 23 99 124 99 124 0.89 2 13 6.8e-05 0.029 17.1 2.3 1 23 130 152 130 152 0.98 3 13 6 2.5e+03 1.6 0.1 2 9 158 165 157 180 0.87 4 13 0.5 2.1e+02 5.0 0.4 2 17 187 201 187 202 0.79 5 13 0.0002 0.085 15.7 5.0 1 23 216 238 216 238 0.98 6 13 8.2e-05 0.035 16.9 2.1 1 23 244 266 244 266 0.96 7 13 3.3e-05 0.014 18.1 6.3 1 23 271 293 271 293 0.99 8 13 0.015 6.5 9.7 2.6 2 23 301 323 301 323 0.92 9 13 0.00016 0.067 16.0 0.7 1 23 348 370 348 370 0.99 10 13 1.9e-05 0.008 18.9 3.7 1 23 376 399 376 399 0.97 11 13 2.8e-07 0.00012 24.7 0.8 1 23 405 428 405 428 0.96 12 13 1.3e-05 0.0054 19.4 0.9 1 23 434 456 434 456 0.98 13 13 0.00023 0.099 15.5 2.5 1 23 462 484 462 484 0.99
Sequence Information
- Coding Sequence
- ATGAACTTTGGGGAATTGTGTACCGGCCTCGACATCATAATAAAGCTTAATGATGAAAATATCAATTTAGATGAAGACTTTCCAGAAGATTTTGAGGGTGATCAATTAATTACAATTCAGGAGCATTACCAGTTCCCTGGTGATGAGCAAGAAACTGTTCCAGATCCAGTTGAGGATGAGTCAATGTATGATCATCTCTTAGACACCCTGGCCTCAGATGAAGAAACTCAAAAATACGCAAATACAATGCAATCAAATGAGGAAATGGAGGCAGTTATTTCCGAGTTTAAACCTTTTCAATGTGAGTATTGCATGGACGTCGTGAGTTTTGACGACACCGAGTTGCTCAATAAGCATTACAACATTTTCCATTCTTCGGAGGAGCCTTATCCATGCCCCAAGTGCGATAAGCACTTCAATACTAAAGTAAAACGAAATAGCCACGCGAGAGTGCACTTTCGCCATACTATTTCTTGTCCAgtttgtaaaaagaaaattcgAGGCGGCAAGAGAATGTTGGCTCAACACTTTGAATTGCACCACAATGAGAAGAAGCGTGAGTGCCTAACCTGTGGTAAGAAGTTTGATAAAATTACGTTGAAGAGATTTAACTATCACTTGAGTTGGCATGATGATTCCAAACTTCATAAATGCAAGTTTTGTGATAAGAAGTTCATTCAGGTGACGCATTTGGCAGTGCATGAGAAAACACACACCGGAGAGTGCCCATACTTATGCAGTCAGTGTGGACTTGGATTTAAAAGTTCCAACCTTTTGCACTCACATTTAAAAACCCATGGAGCAACAGAATACGAGTGCCCGCATTGTCCCAGAAAATTCTTCCATCGACATGGATTAAAACTCCACATTCAGACACACGATCGCGGTAAAAAGGCTCCATATTGTGAAATTTGTAAGAGGTCTTTTGGGTCTATGATGAATCTTCGTTTGCACAACCACAGGAGGCATGGTGGACCATCATCACCCGCaattattaacattttaaagaaacgcgttaagaaacaaattttcataaagCCATACAAATGCGCACAGTGCCCAGAGGCATTTGTGCTGCACATACAGCTACTTAAACATTTGAAAACGCATGAAGAGAACCGACCACATAAGTGCGACCGTTGTGGTAGATCATACAAACGTGAAGCTcatttaaaattgcatttgaaCTCTGTTCACCTGAATAACAAACCACATAAGTGCACCATTTGTGGATGGGCATTTTCACAAAAGAACAATTTGACGGAACACATAGCTTCGAAACATCAAGATAAAAGAGACTTTGTGTGCGACATATGCGGGAAGGCTTTTGCCATTGCAAAGACTCTTAGACATCATAAACAAAAGCATTCGGACAAGAAACCGTACACGTGTAATATATGCCATAAACGGTTCACGATGATGGGAATACTAAAGTCACACATTAACACTCATCTGAAAAAGAAGGAGGCCGATGTCGCTGCAGGAGACATTACAGATGTTCTATTGTAA
- Protein Sequence
- MNFGELCTGLDIIIKLNDENINLDEDFPEDFEGDQLITIQEHYQFPGDEQETVPDPVEDESMYDHLLDTLASDEETQKYANTMQSNEEMEAVISEFKPFQCEYCMDVVSFDDTELLNKHYNIFHSSEEPYPCPKCDKHFNTKVKRNSHARVHFRHTISCPVCKKKIRGGKRMLAQHFELHHNEKKRECLTCGKKFDKITLKRFNYHLSWHDDSKLHKCKFCDKKFIQVTHLAVHEKTHTGECPYLCSQCGLGFKSSNLLHSHLKTHGATEYECPHCPRKFFHRHGLKLHIQTHDRGKKAPYCEICKRSFGSMMNLRLHNHRRHGGPSSPAIINILKKRVKKQIFIKPYKCAQCPEAFVLHIQLLKHLKTHEENRPHKCDRCGRSYKREAHLKLHLNSVHLNNKPHKCTICGWAFSQKNNLTEHIASKHQDKRDFVCDICGKAFAIAKTLRHHKQKHSDKKPYTCNICHKRFTMMGILKSHINTHLKKKEADVAAGDITDVLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01522061; iTF_01522874;
- 90% Identity
- iTF_01522061; iTF_01522874;
- 80% Identity
- -