Vina022601.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- -
- Assembly
- GCA_907269105.1
- Location
- OU026155.1:158255351-158257341[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.65 1.1e+02 4.6 1.3 1 23 156 181 156 181 0.89 2 13 7.6e-05 0.013 17.0 2.3 1 23 187 209 187 209 0.98 3 13 4.1 6.9e+02 2.1 0.1 2 10 215 223 214 237 0.83 4 13 1.2 2e+02 3.8 0.3 2 11 244 253 244 259 0.81 5 13 0.00022 0.037 15.5 5.0 1 23 273 295 273 295 0.98 6 13 9.1e-05 0.015 16.7 2.1 1 23 301 323 301 323 0.96 7 13 3.7e-05 0.0062 17.9 6.3 1 23 328 350 328 350 0.99 8 13 0.0077 1.3 10.6 2.7 2 23 358 380 358 380 0.92 9 13 0.00017 0.029 15.8 0.7 1 23 405 427 405 427 0.99 10 13 2.1e-05 0.0035 18.7 3.7 1 23 433 456 433 456 0.97 11 13 3.1e-07 5.1e-05 24.5 0.8 1 23 462 485 462 485 0.96 12 13 1.4e-05 0.0024 19.3 0.9 1 23 491 513 491 513 0.98 13 13 0.00026 0.043 15.3 2.5 1 23 519 541 519 541 0.99
Sequence Information
- Coding Sequence
- ATGTACACATCTACTGAGTACCACAATGAACTAAAGATGGTCCAAGAAGAATTCGACATATGGAATCTAAATATCGCTGAAGATGACGGATTGCCGCAAAAAATTTGCTTAACCTGCTTCGACAGCTTTTGTCAAATACACAATTttcgaataatatgccaagaAGCACAGATGAACTTTGGGGAATTGTGCACCGGCCTCGACATCATAATAAAGCTTGAtgatgaaaatatcaatttagaTGAAGACTTTCCAGAAGATTTTGAGGGCGATCAATTAATTACAATACAGGAGCATTACCAGTTCCCAGGTGATGAACAAGAAGCTGTTCCAGAACCAGCTGAGGAAGGGTCAATATATGACAATCTCTTAGACACCCTAGCCTCAGATGAAGAAACTCAGAAATACGGAAATACAATGCAATCAAATGAGGAAATGGAGGCTGTCATTTCCGAGTTTAAACCTTTTCAATGTGAATATTGCATGGACGTCGTCAGTTTTGACGATACTGAGTTGCTCAATAAGCATTACAACGTTTACCATTCTTCAGAGGATCCCTATCCATGCCCCAAGTGCGATAAGCACTTCAATActaaagtaaaaagaaatagCCACGCGAGAGTGCACTTTCGCCATACGATTTCTTGTCCAGTTTGTAAAAAGAAAGTTAGAGGCGGCAAGAGAATGTTGGCTCAACACTTCGAATTGCACCACAATGAGAAGAAACGTGAGTGCCTAACCTGTGGTAAGAAGTTTGAGAAAATTACATTGAAGAGATTTAACTATCACTTGAGTTGGCATGATGATTCCAAACTTCATAAATGCAAGTTTTGTGATAAGAAGTTCATCCAGGTGACGCATTTGGCAGTGCATGAGAAAACACACACCGGAGAGTGCCCATACTTATGCAGTCAATGTGGACTTGGATTCAAAAGTTCAAACCTTTTACACTCTCATTTAAAAACTCATGGAGCAACAGAATATGAGTGCCCGCATTGTCCCAGAAAATTCTTCCATCGACACGGATTAAAACTTCACATTCAGACGCATGATCGCGGTAAAAAAGTTCCATATTGTGAGATTTGTAAGAAGTCTTTTGGGTCTATGATGAATCTTCGTTTGCACAACCACAGAAGGCATGGTGGACCATCATCACCGGCaattattaacattttaaaaaaacgtgttcagaaacaaatttttataaagcCATACAAATGCGCGCAGTGCCCAGAGGCATTTGTGCTGCACATACAGcttcttaaacacttgaaaacGCATGAAGAGAACCGACCACATAAGTGCGACCGTTGTGGCAGATCATACAAACGAGAAGCtcatttaaaattacatttgaaCTCTGTTCACCTAAACAACAAACCACATAAATGCACCATTTGTGGGTGGGCATTTTCCCAAAAGAACAATTTGACAGAACACATAGCTTCGAAACATCAAGATAAAAGAGACTTTGTGTGTGACATTTGTGGGAAGGCTTTTGCAATTGCTAAGACTCTTAGACATCATAAACAAAAGCATTCGGACAAGAAACCGTACACGTGTAATATATGCCATAAACGGTTCACGATGATGGGAATACTAAAGTCACACATCAACACTCATCTGAAAAAGAAGGAGGCCGATGTCGCTGCAGGAGATATTACAGATGttctattgtaa
- Protein Sequence
- MYTSTEYHNELKMVQEEFDIWNLNIAEDDGLPQKICLTCFDSFCQIHNFRIICQEAQMNFGELCTGLDIIIKLDDENINLDEDFPEDFEGDQLITIQEHYQFPGDEQEAVPEPAEEGSIYDNLLDTLASDEETQKYGNTMQSNEEMEAVISEFKPFQCEYCMDVVSFDDTELLNKHYNVYHSSEDPYPCPKCDKHFNTKVKRNSHARVHFRHTISCPVCKKKVRGGKRMLAQHFELHHNEKKRECLTCGKKFEKITLKRFNYHLSWHDDSKLHKCKFCDKKFIQVTHLAVHEKTHTGECPYLCSQCGLGFKSSNLLHSHLKTHGATEYECPHCPRKFFHRHGLKLHIQTHDRGKKVPYCEICKKSFGSMMNLRLHNHRRHGGPSSPAIINILKKRVQKQIFIKPYKCAQCPEAFVLHIQLLKHLKTHEENRPHKCDRCGRSYKREAHLKLHLNSVHLNNKPHKCTICGWAFSQKNNLTEHIASKHQDKRDFVCDICGKAFAIAKTLRHHKQKHSDKKPYTCNICHKRFTMMGILKSHINTHLKKKEADVAAGDITDVLL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01521350;
- 90% Identity
- iTF_01521350;
- 80% Identity
- -