Vbom073943.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949129095.1
- Location
- OX422143.1:175783920-175798802[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.9e-116 4.7e-111 373.3 33.9 1 299 61 351 61 352 0.93 2 2 0.077 7.5e+03 -1.7 4.5 220 244 380 404 356 426 0.45
Sequence Information
- Coding Sequence
- ATGTTGATACTATCGAACTCCAATGCACTACTCAATGATGATCTGTTGTTGTACACGACACGTGGGGATCTAGAGCGAAAACAGTTCAAAATGCTCTTAAAAACAACTGGAAATATTGCTTCTGTAGCTTCAAGTGTGGCTGAAAATCCAGGTTTGTCGATTCCGCGTCGATTTCAGGAAgctGAAGCGAGACTGGCAGCCAGACGGCAGGCACGTGCTGAAGCGCGGGAAATTCGCATGCGCGAATTGGAACGTcaacaaaaagaacaagaacaaaaTGCCGACCGGGTATTTGATATGCAAACAGCGGCAGGTATTGATCCCTTGGCTAGATCCCGCCTTACAGCGGCCAGCGTCACCGGGGTGGTCAATTCTGTGCGCGCAAGTTCGATGTCTTCCCGCCGGAGCAGTGAAGATTCCCTGGAGGAGGAAGGCCGCAGCTTACGTGATATAAGACATGAACTCAAGGACGTCGAAGAACGCTTTAGAAAGGCAATGATAGCCAATGCACAACTAGATAACGAACGAGCCTCACAATCCTATCAAATTCAATTGCTGAAGGACAAGCTTGAAGAAATGGAAGAGTCACATGCCCAGTTGCAGCGTGAATTCAAAGAGAAATCACGTGAATGTAATGCTTTCAAGCGAAATCTTGACAAATTGACGGAAGAGTTGAAGCTCATTAATGGTCAGCTTAATGAGCGTGATGCGCTTATAGCTGAACAGGGTTTAGTTATTGTAGCTGTAGAAAATGAAGATGGCTCAGATGCCAAACGTGCTCTAGTCACTATGGAGAATGCACAATTGTTAGGTTCTGTACAAGGTTCTCTTGATGTTCGACTTAAAAAGTTTAGCGaggaaaaacaacaacttcAAGCTGAAGTGCAAAACTTACAGGAACAATTAGAAAATGTTAAGACACAGGGACGAGGTAGAGGCAACTCAATGAATGGTCCATTAGGATCTGATGATGATTATGAAGCTCAAAGAGAAGCAAATAAAATCATCTCCGACTACAAATACAAATTGCAGAAGGCCGAACAAGAAATCGCTAGTCTACAAGCCAGCTTAGCTAGATCCGAAACACAAGTAATACGATACAAGAGTACAGCGGAAGCTGCTGAAAAGGCTGAAGCCGAGTTGAAAATCGAAAGGAGAAAGTTGCAAAGAGAGAACCGCGAAGCAATGGAACGACTAGAAGAACTAGAAACTTCTAATAATCACCTTTTAAAACGACTGGACAAATTAAAGAATGCCAAGAGCGCGCTACTAAAGGAACTTTGA
- Protein Sequence
- MLILSNSNALLNDDLLLYTTRGDLERKQFKMLLKTTGNIASVASSVAENPGLSIPRRFQEAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLARSRLTAASVTGVVNSVRASSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESHAQLQREFKEKSRECNAFKRNLDKLTEELKLINGQLNERDALIAEQGLVIVAVENEDGSDAKRALVTMENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQNLQEQLENVKTQGRGRGNSMNGPLGSDDDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- iTF_00335040;
- 80% Identity
- -