Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 5.3e-13 4e-10 41.6 0.0 4 41 101 139 98 142 0.89

2 3 4.5 3.4e+03 0.2 0.0 28 37 172 181 171 187 0.85

3 3 5.5e-09 4.2e-06 28.7 0.0 3 39 210 246 209 251 0.86

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	5.3e-13	4e-10	41.6	4	41	101	139	98	142	0.89
2	3	4.5	3.4e+03	0.2	28	37	172	181	171	187	0.85
3	3	5.5e-09	4.2e-06	28.7	3	39	210	246	209	251	0.86

Coding Sequence: ATGCCAGTTAAATCGACAGATGACTCTGTCCCAAAAAATGACCAGTTTCTAATATTTGAACTAAAGTCCAAAACAGAACCGATGTATAACTACGTTATAACACAGGTTAAACCACCACCTCAAGATGAAGGAGATCTCAAAAATGAGGTCACTTCTGACTCTGTTGAACCTCAAAAGGATCAAAGTCAGCAAAGTCCCCCTCCATATGTGATAAGTGTACAGATACCAGTAGAGGAGGACAAAGATGAAGCCAAAGAAAATTCGAATTCTGTAAAACTTAAACGTGCTTTTCGGCGGAAAAAACTTTCAGAGGCCTTAGACGCTGTAGTCAATAAGCAACTGACAATAAGTAAGGCTGCCAGTGTATTTGAGGTGACCAAAAGCACTCTTTGGAGAGAGGTTAACAAGTACACAAACCATCGGCGAAAAAAAGTCGACGAGGAGTTGAATAAAAGGATCGCCGATCGTATTTGTTCGGGGGAATCTCTATCAGTCATTTCAAGATCCCTAAAAGTTGCCAAGTCAACTTTACATCAACATAAAGTTCGACTAGCCCAACGGGGTCAACTACCGCCAAACGTGCCACTTAAACCGCCAACTCATCCTGCGGAGAAACTCGCAATGAAAGAGCGTATCATTCAGGCGTTTCGTGGCTGTCGTGTCAATGGTATGTCAATACGTTTTGCAGCAAAATTCTTCTCAATACCACCGTCAACATTGTGGAAGCATATACGTCGTTTTCAAGCCTCCCAAAAGCGATTTGCTGATATACACCAAGAGTCTATAGAAGTCGAGCCGATTGAAGTCAAAGTAGATCTTCCCGATGAGGATGAAAACGCCGACAATGAGGAGAAACAGGTGAAAGCGACGCTTGTCAAGGAAATGGACTTAAACGACTTTGATGTGGACGCCTATTGCGAGCAACCAGAGGAAAATACCAGTGATGATGGTGACTTTTTGATAAGTTTTGACTTTGAAACTTTTGAATCGTATGTTAAGAGAGAGCTCGAGTaa
Protein Sequence: MPVKSTDDSVPKNDQFLIFELKSKTEPMYNYVITQVKPPPQDEGDLKNEVTSDSVEPQKDQSQQSPPPYVISVQIPVEEDKDEAKENSNSVKLKRAFRRKKLSEALDAVVNKQLTISKAASVFEVTKSTLWREVNKYTNHRRKKVDEELNKRIADRICSGESLSVISRSLKVAKSTLHQHKVRLAQRGQLPPNVPLKPPTHPAEKLAMKERIIQAFRGCRVNGMSIRFAAKFFSIPPSTLWKHIRRFQASQKRFADIHQESIEVEPIEVKVDLPDEDENADNEEKQVKATLVKEMDLNDFDVDAYCEQPEENTSDDGDFLISFDFETFESYVKRELE

Sequence clustering based on sequence similarity using MMseqs2