Vbom075050.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422143.1:186320666-186321824[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-05 0.012 17.7 0.0 4 27 153 176 150 176 0.92 2 3 5.7 4.3e+03 -0.1 0.0 28 37 196 205 195 208 0.85 3 3 6e-09 4.6e-06 28.6 0.0 3 39 234 270 233 275 0.86
Sequence Information
- Coding Sequence
- ATGTCTGAAGATAACCAAGAAAATGGAACCTCCAACGGGGATGTCCCAGAAATCGAATTAATTATTAAGGATGCAAtaaaaaatgtcgaagaccTCGTTGATACAGTTGGTACAGATTCAAAGACAGTTATACCGATACTACTACCACTGATGCCAGTTAAATCGACAGATGACTCTGTCCCAACAAATGACTCTGTCCCAAAAAATGACCAGTTTCTAATATTTGAACTAAAGTCCAAAACAGAACCGACGTATAACTACGTTATAACACAGGTTAAACCACCACCTCAAGATGAAGGAGATCTCAAAAATGAGGTCACTTTTGACTCTGTTGAACATCAAAAGGATCAAAGTCAGCAAAGTCCCCCTCCATATGTGATAAGTGTACAGATACCAGTAGAGGAGGACAAAGAAAATTCGAATTCTGTAAAACTTAAACGTGCTTTTCGGCGGAAAAAACTTTCAGAGGCCTTAGACCCTGTAGTCAATAAGCAACTGACAATAAGTAAGGCTGCCAGTGTTTTTGAGGATCGTCGATCGTATTTGTTCGGGGGAATCTCTATCAGTCATTTCAAGTCCCTAAAAGTTGCCAAGTCAACTTTACATCAACATAAAGTTCGACTAGCCCAATGGGGTCAACTGCCACCAAACGTGCCACTTAAACCGCCAACTCATCCTGCGGAGAAACTCGCAATGAAAGAGCGTATCATTCAGGCGTTTCGTGGCTGTCGTGTCAATGGTATGTCAATACGTTTTGCAGCAAAATTCTTCTCAATACCACCGTCAACATTGTGGAAGCATATACGTCGTTTTCAAGCCTCCCAAAAGCGATTTGCTGATATACATCAAGAGTGTATAGAAGTCGAGCCGATTGAAGTCAAAGTAGATCTTCCCGATGAGGATGAAAACGCCGACAATGAGGAGAAACAGGTGAAAGCGACGATTGTCAAGGAAATGGACTTAAACGACTTTGATGTGGACGGCTATTGCGAGCAACCAGAGGAAAATACCAGTGATGATGGTGACTTTTTGAGAAGTTTTGACTTTGAAACTTTTAAATCGTATGTTAAGATAGAGCTCGAGTaa
- Protein Sequence
- MSEDNQENGTSNGDVPEIELIIKDAIKNVEDLVDTVGTDSKTVIPILLPLMPVKSTDDSVPTNDSVPKNDQFLIFELKSKTEPTYNYVITQVKPPPQDEGDLKNEVTFDSVEHQKDQSQQSPPPYVISVQIPVEEDKENSNSVKLKRAFRRKKLSEALDPVVNKQLTISKAASVFEDRRSYLFGGISISHFKSLKVAKSTLHQHKVRLAQWGQLPPNVPLKPPTHPAEKLAMKERIIQAFRGCRVNGMSIRFAAKFFSIPPSTLWKHIRRFQASQKRFADIHQECIEVEPIEVKVDLPDEDENADNEEKQVKATIVKEMDLNDFDVDGYCEQPEENTSDDGDFLRSFDFETFKSYVKIELE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520880;
- 90% Identity
- -
- 80% Identity
- -