Vsat125564.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_036346205.1
- Location
- JARFJB010001921.1:1050367-1058332[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-108 1.8e-102 346.3 33.5 1 300 97 390 97 390 0.94 2 2 0.022 5.1e+03 0.1 6.2 121 171 389 439 388 465 0.66
Sequence Information
- Coding Sequence
- ATGTGTGACACAGACCTAAATAATTCCATATCATCTGGAAGTGTTGACTCTTTAAcggacattttaaataatttagactCCGACAATGATCAACTTGATGGCAGAGAATACAATAAACACACCAAACTTGGTGTACTTGAAATAACTAATCAGTACGTAACTCTACCCGAAAACAACGATCatgtaaatacaaaacaaattaaagaagATTTTACGACGAAAGAAACAGAGTTTGATAATACGCCAACAAATATCATTAACCAATTTCTTAGTCATTGTAATGATGATgcAGAAGCGCGTCTTTTGGCAAGGCGGCAGGCAAGAGCAGAGGCAAGAGATATTCGTATGCGCGAATTAGAACGTCAACAAAAGGAGCAGGAAGAGAATGCCGATAGACAGTATGACATGTTAGAGGCAACTCATAGAACTGCTAGAACAAGTGGAAATCGTTACCTTTCCAGTCGACGGAGTTCAGAAGATTCTCTTGAAGATGGAGGCAGTATTAGGGAAATACGGCATGAACTTaaagaaatggaagaaaagttTCGAAAAGCTATGATTGCTAATGCTCAATTAGACAATGATAAAGCTTCACAAACATATCAACTAGAACTTCTTAAAGATAGGTTAGAAGAATTAGAAGAAGAATTTTCTCAACTACGTCGAGAGCATAGAGATAAATGTAGGGAGCATGATCAACTTAAAAGATTAGCAGCGCGTCTTAAAGATGATTTGGCTGTGACTAGGGTAGAATTAGAGGAACGTGATCATTTAATTGCTGAAAAAGGTTTGGTGATAGTTGTAGAAGATGTTCCTTCTTATGAAGAGGAGAGTAGAGAGGATGTGACTGTTAATGGAATTTCTAGTACACCTAAAAAAACTTTAGTTACAGCTGAAAATGCACAACTATTAGAAAATGCAGGAGAAGGAAGTTTAGatgTACGGTTAGGAAGGTTTGCTTTAGAGAAAAAAGATCTACAAGACCAAATCAGTCACTTAAGATTAGAATTAGAAGAGGAAAGAAATAAAAGGCGAAAAACCAGTGGAGTAAgtttaaatggtccaatatcagAATCTGATTATGATGTGGACGATATTCAAAGAGATGTAGGACGCCAATTAGCTGATTACAAATTTAGAGCTCAAAAAGCGGAACAAGATGTTGCTACTTTACAAGCAACTGTGGCTAGACTTGAAAGTCAAGTAATTAGATATAAATCTGCATctgaaatatatgaaaaatcagaagaagcattaaaacaagaaaaacggAAACTACAAAGAGAGgcAAGAGAGGCGCAAAATCGAGCAGAAGAACTGGAAACTGCCAACACCCATTTATTAAAACGATTAGACAAGCTTAAAAATGCCAAATCCACATTACTTAAAGAACTCTGA
- Protein Sequence
- MCDTDLNNSISSGSVDSLTDILNNLDSDNDQLDGREYNKHTKLGVLEITNQYVTLPENNDHVNTKQIKEDFTTKETEFDNTPTNIINQFLSHCNDDAEARLLARRQARAEARDIRMRELERQQKEQEENADRQYDMLEATHRTARTSGNRYLSSRRSSEDSLEDGGSIREIRHELKEMEEKFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEEFSQLRREHRDKCREHDQLKRLAARLKDDLAVTRVELEERDHLIAEKGLVIVVEDVPSYEEESREDVTVNGISSTPKKTLVTAENAQLLENAGEGSLDVRLGRFALEKKDLQDQISHLRLELEEERNKRRKTSGVSLNGPISESDYDVDDIQRDVGRQLADYKFRAQKAEQDVATLQATVARLESQVIRYKSASEIYEKSEEALKQEKRKLQREAREAQNRAEELETANTHLLKRLDKLKNAKSTLLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00151782;
- 90% Identity
- -
- 80% Identity
- -