Basic Information

Insect: Vespa mandarinia
Gene Symbol: gfi1b
Assembly: GCA_014083535.1
Location: JACHAV010000051.1:1015847-1021625[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.14 10 6.3 1.4 1 23 303 325 303 325 0.91

2 12 0.00011 0.008 16.1 1.9 1 23 330 354 330 354 0.92

3 12 0.19 13 5.9 2.5 2 23 422 444 421 444 0.93

4 12 1.2e-07 9e-06 25.4 1.3 1 23 450 472 450 472 0.98

5 12 0.0023 0.17 11.9 0.1 1 23 481 504 481 504 0.89

6 12 1.8e-07 1.3e-05 24.9 3.6 1 23 510 532 510 532 0.98

7 12 2.1e-06 0.00015 21.5 1.0 1 23 538 560 538 560 0.98

8 12 2.5e-05 0.0018 18.1 2.0 1 23 566 588 566 588 0.97

9 12 1.1e-08 7.6e-07 28.7 1.8 1 23 594 616 594 616 0.99

10 12 8.7e-06 0.00062 19.6 5.7 1 23 622 644 622 644 0.98

11 12 8.5e-06 0.00062 19.6 1.6 1 23 678 700 678 700 0.98

12 12 2e-07 1.4e-05 24.8 1.5 1 23 706 728 706 728 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.14	10	6.3	1.4	1	23	303	325	303	325	0.91
2	12	0.00011	0.008	16.1	1.9	1	23	330	354	330	354	0.92
3	12	0.19	13	5.9	2.5	2	23	422	444	421	444	0.93
4	12	1.2e-07	9e-06	25.4	1.3	1	23	450	472	450	472	0.98
5	12	0.0023	0.17	11.9	0.1	1	23	481	504	481	504	0.89
6	12	1.8e-07	1.3e-05	24.9	3.6	1	23	510	532	510	532	0.98
7	12	2.1e-06	0.00015	21.5	1.0	1	23	538	560	538	560	0.98
8	12	2.5e-05	0.0018	18.1	2.0	1	23	566	588	566	588	0.97
9	12	1.1e-08	7.6e-07	28.7	1.8	1	23	594	616	594	616	0.99
10	12	8.7e-06	0.00062	19.6	5.7	1	23	622	644	622	644	0.98
11	12	8.5e-06	0.00062	19.6	1.6	1	23	678	700	678	700	0.98
12	12	2e-07	1.4e-05	24.8	1.5	1	23	706	728	706	728	0.98

Sequence Information

Coding Sequence: ATGGCGGTGGTCCGTCTGTATGATTCTACTATTTGTCGGCTATGTGCGGAAGACAATGGCAATGGAGAATTATTGTATAGGGGCGAGGGTGATGATACAGATTTAAGTTCTATGGTGAATCGTTATTTACCATTAAAGatTCGAGATGATGGCAAATTACCTAGAACAATCTGCCCTGGCTGTAATATTCAGCTGGAGGCTActgtacaattttttaaattattggtGGATGGGCAACAAAAAATACGAGAGATGTGGAAACATCAGGTCGAATTGCAAAGAAAAGCAGAAAGAGAACGTTTACGTGTTGAGAGACAAAATACAGAAGTTATTACAGGATTGCCAGATTCTGATAATAACATAAGAAATAGTGAAGATAATCAATTAGAACAACAGATAATCATTAAAgTAATGCCTGATGGGTCCTTATATACTGCTGAACATGAAATAAGTTTGCAAATGGAAGGCTTAATTAAACCAAGACGAAAAAGAGGTCGGCCTCCCAAAGTTCATACTGATATGGAATCTAAGataattttaaaagaagacATTATAGAAGGAGTAAGTCAAGGTGAAGAAGATAAACAAGAGGAAGAGATTGAAGAAGTTGATGGTGATGGTAGACGCCGTAGAAAGCGTAAAGTTCCCAAAAgatttATGGAAGCTGTTCAAGGCAAAGAATTGGAAAGAATATTTAAGGAAGAAGGTGTTatagatgaagaagaggacgaagaagcTGATCATTTTGATGATTCTGAAGAACGATTAAATGTCTCAATTCCAGATGGTCAAGAAGAAATAATTGGACATTTAGAAActgaagaaggaaaggattTAGGAGAATTAGTAATCGTAAATCGTGGAAGAGGCCGTGGTAGACCAAAATTGCGACGTCGAAAAAATAAGTTTACTTGCCAACTATGTGGTAGAGGTTTTTTACAACGTAGTAGATATATTGTACACAAAAGTTTTCATAAAAGTGTAAAATACGAATGTAGAGAATGTAAGAAGTTATTTACAAACAAGGACAATTTTGCACTGCATCAAAAAATGACCCAACATACTGGATGTAGTATTACAGAAATTAGTGATGAAcatgataatcatcaaaacCAAATAGTTGAAAATACAAATTCGGTATCGAATAATGCATCGTCGAATGAAACCAAGGATTCAGGAAATACATTtacaaataatcaaaatatggAAATAGTCACAGAGACTTCAGACAAAAATGTAACAAATAATTCAGATACAAATATTATGTGTGGACAATGTGAAAAGACATTTCACACAAAAGAATCATGTGAATtacatgtaaaaataattcatgaaaacgaaaaaccatttatttgtaacatttgtaataaaagtttttcttatcaaacaaatttaaaaggTCATATGCTAACTCATGAGggAAACAAATCGGACAAAGGATATCCTTGTGATATTTGTGGAAAAGTATTAAATCATCCAAGTTCTGTTGTATATCATAAAGAAGCTGAACACAATAATGGCCGTCGTTTTGTATGTAATAAATGTGGAAAGAGTTTTAAACATAAGCAATTATTACAACGTCACCAACTTGTACATTCTGATGATCGACCTTATGTATGCAAATCATGTAATGCTAGCTTTAAAACAAAagcaaatttaattaatcaccAGTCTACACATacaggagagaaaaaatatttttgtgaaATATGTGGTCAACAGTTTGCTCATAAAACCAGTTTGACTTTACATTACAGGTGGCATACCGGTCATAAACCATATACTTGTGAAGTTTGTCACAAAAGTTTTTCTCAAAATGGTAATCTTCAAGAGCATATGCGCATACATACTGGAGAAAAACCATACTGTTGTGATTATTGTGGACGTAAATTCACAACTTCGTCACAATTTAAATTACATGTTAAACGTCATACTGGTGAACGTCCATGGAAATGTGAGTTTTGTGCCAAATGTTTTCTACATAAAGACACCTGGAAGTGTCATGTACGTAGGCATAAAGGAGAGAGACCTTTCCAATGTGCCCATTGTAATCGTGGATTTACAGAACAATGGGCTTTAAAAAAACATCTTCGGTTACACACAGGTGAAAAACCATATTCTTGTGATGTTTGTGGAAAAGCTTTTGCTGATTGTTCTAACTTAACAAAACATAAAAAGGTGCATAGAGAAAGCAAAGTTTTAACATTAGGTGAAATAACTGAAGGTTCTGCAGTTGGTGAAGTATGGCAAATCTTACCAGGCTCCCAAGAGACAGATGAAAATTCATTAAGTGATCAAATGGCTCAAGTCATTACGGCGGAAGAAACATCTGCAGATGGAAtacaacaaattatttatgtcTCTTATCAAGATCCTGATGATCCCAATTTAtcaagaacattgcattttgTTGATGCTGGTATGATGcgtgaaaaagaaggaatggtAAGCACTCCAGGACAATCTTTACCTCATTTGGatgttgaaaatgaaatactcCCCGACCAAACGCATAATCACCACACAGCCAATACTTCGGATGAACGAATGGATATGGAACTATCGGAGCCAGATTTACAATtacaaaTTACAGATGAAGAAGGTAATCCAATTCCACTTTCTATACAAGACGCAAGACAATTATTGTCACAAGGACAATTTGTTAGTCAGTTAAATGATGGTCAAACTATTAGAGTTCATTCAGGTGTAATCACTCAAGAGTTTGCAGGATCTTTAGGTGTTCATGTAAATCAGAATAGTAATGTATCAACAGTGAATAATACTGCAATCAATGAAGTAAATAAAACAAGTTCAATATCAACTATACAAACGGATGCAGAAGCAATTGTCAAAGCATTAGAAGATGAAGATACGGATGCAACAGCTGTTGCTACTATAAATCAAATGGGAGGTGAAGATCAGGCAGAAATATCAGATGGACAACAAGCTATAGAATTTACAACACAGGATGGACAAAAAGTTCGACTTGTTGCTTCATACCATGTTGATCCATTGCAACTTGCTTCAGAGTACCTGACTAttgtataa
Protein Sequence: MAVVRLYDSTICRLCAEDNGNGELLYRGEGDDTDLSSMVNRYLPLKIRDDGKLPRTICPGCNIQLEATVQFFKLLVDGQQKIREMWKHQVELQRKAERERLRVERQNTEVITGLPDSDNNIRNSEDNQLEQQIIIKVMPDGSLYTAEHEISLQMEGLIKPRRKRGRPPKVHTDMESKIILKEDIIEGVSQGEEDKQEEEIEEVDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEEDEEADHFDDSEERLNVSIPDGQEEIIGHLETEEGKDLGELVIVNRGRGRGRPKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHKSVKYECRECKKLFTNKDNFALHQKMTQHTGCSITEISDEHDNHQNQIVENTNSVSNNASSNETKDSGNTFTNNQNMEIVTETSDKNVTNNSDTNIMCGQCEKTFHTKESCELHVKIIHENEKPFICNICNKSFSYQTNLKGHMLTHEGNKSDKGYPCDICGKVLNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCKSCNASFKTKANLINHQSTHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCEVCHKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRESKVLTLGEITEGSAVGEVWQILPGSQETDENSLSDQMAQVITAEETSADGIQQIIYVSYQDPDDPNLSRTLHFVDAGMMREKEGMVSTPGQSLPHLDVENEILPDQTHNHHTANTSDERMDMELSEPDLQLQITDEEGNPIPLSIQDARQLLSQGQFVSQLNDGQTIRVHSGVITQEFAGSLGVHVNQNSNVSTVNNTAINEVNKTSSISTIQTDAEAIVKALEDEDTDATAVATINQMGGEDQAEISDGQQAIEFTTQDGQKVRLVASYHVDPLQLASEYLTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01090139;
90% Identity: iTF_01512327; iTF_01514959; iTF_01513625; iTF_01090139; iTF_01514303;
80% Identity: -