Basic Information

Insect: Vespa crabro
Gene Symbol: gfi1b
Assembly: GCA_025728115.1
Location: JAITYU010005552.1:169394-174438[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.17 12 6.3 1.4 1 23 303 325 303 325 0.91

2 11 0.00013 0.0095 16.1 1.9 1 23 330 354 330 354 0.92

3 11 0.22 16 5.9 2.5 2 23 422 444 421 444 0.93

4 11 1.5e-07 1.1e-05 25.3 1.3 1 23 450 472 450 472 0.98

5 11 2.2e-07 1.5e-05 24.8 3.6 1 23 528 550 528 550 0.98

6 11 2.4e-06 0.00018 21.5 1.0 1 23 556 578 556 578 0.98

7 11 3e-05 0.0021 18.1 2.0 1 23 584 606 584 606 0.97

8 11 1.3e-08 9e-07 28.7 1.8 1 23 612 634 612 634 0.99

9 11 1e-05 0.00074 19.5 5.7 1 23 640 662 640 662 0.98

10 11 1e-05 0.00073 19.6 1.6 1 23 696 718 696 718 0.98

11 11 2.3e-07 1.7e-05 24.7 1.5 1 23 724 746 724 746 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.17	12	6.3	1.4	1	23	303	325	303	325	0.91
2	11	0.00013	0.0095	16.1	1.9	1	23	330	354	330	354	0.92
3	11	0.22	16	5.9	2.5	2	23	422	444	421	444	0.93
4	11	1.5e-07	1.1e-05	25.3	1.3	1	23	450	472	450	472	0.98
5	11	2.2e-07	1.5e-05	24.8	3.6	1	23	528	550	528	550	0.98
6	11	2.4e-06	0.00018	21.5	1.0	1	23	556	578	556	578	0.98
7	11	3e-05	0.0021	18.1	2.0	1	23	584	606	584	606	0.97
8	11	1.3e-08	9e-07	28.7	1.8	1	23	612	634	612	634	0.99
9	11	1e-05	0.00074	19.5	5.7	1	23	640	662	640	662	0.98
10	11	1e-05	0.00073	19.6	1.6	1	23	696	718	696	718	0.98
11	11	2.3e-07	1.7e-05	24.7	1.5	1	23	724	746	724	746	0.98

Sequence Information

Coding Sequence: ATGGCGGTGGTCCGTCTGTATGATTCTACTATTTGTCGGCTATGTGCGGAAGACAATGGCAATGGAGAATTATTGTATAGGGGCGAGGGTGATGATACAGATTTAAGTTCTATGGTGAATCGCTATTTACCATTAAAGATTCGAGATGATGGCAAATTACCTAGAACAATCTGCCCTGGCTGTAATATTCAGCTGGAGGCTACTGTACAATTTTTTAAATTATTGGTGGATGGGCAACAAAAAATACGAGAGATGTGGAAACATCAGGTCGAATTGCAAAGAAAAGCAGAAAGAGAACGTTTACGTGTTGAGAGACAAAATACAGAAGTTATTACAGGATTACCAGATTCTGATAATAACATAAGAAATAGTGAAGATAATCAATTAGAACAACAGATAATCATTAAAGTAATGCCTGATGGGTCCTTATATACTGCTGAGCATGAAATAAGTTTGCAAATGGAAGGCTTAATTAAACCAAGACGAAAAAGAGGTCGGCCTCCCAAAGTTCATACTGATATGGAATCTAAGATAATTTTAAAAGAAGACATTATAGAAGGAGTAAGTCAAGGTGAAGAAGATAAACAAGAGGAAGAGATTGAAGAAGTTGATGGTGATGGTAGACGCCGTAGAAAGCGTAAAGTTCCCAAAAGATTTATGGAAGCTGTTCAAGGCAAAGAATTGGAAAGAATATTTAAGGAAGAAGGTGTTATAGATGAAGAAGAGGACGAAGAAGCTGATCATTTTGATGATTCTGAAGAACGATTAAATGTCTCAATTCCAGATGGTCAAGAAGAAATAATTGGACATTTAGAAACTGAAGAAGGAAAGGATTTAGGAGAATTAGTAATCGTAAATCGTGGAAGAGGCCGTGGTAGACCAAAATTGCGACGTCGAAAAAATAAGTTTACTTGCCAACTATGTGGTAGAGGTTTTTTACAGCGTAGTAGATATATTGTACACAAAAGTTTTCATAAAAGTGTAAAGTACGAATGTAGAGAATGTAAGAAGTTATTTACAAACAAGGACAATTTTGCACTGCATCAAAAAATGACTCAACACACTGGATGTGGTATTACAGAAATTAGTGATGAACATGATAATCATCAAAATCAGATAGTTGAAAATACAAATTCGGTATCGAATAATGCATCGCCGAATGAAACCAAGGATTCAGGAAATACATTCACAAATAATCAGAATATGGAAATAGTCACAGAGACTTCAGACAAAAGTGTAACAAATAATTCAGATACAAATATTATGTGTGGACAATGTGAAAAGACATTTCACACAAAAGAATCATGTGAATTACATGTAAAAATAATTCATGAAAACGAAAAACCATTTATTTGTAACATTTGTAATAAAAGTTTTTCTTATCAAACAAATTTAAAAGGTCATATGCTAACTCATGAGAAAAAGAGTAAATTGAATTATATATTGGTATTTAATAATATTAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCATCCAAGTTCTGTTGTATATCATAAAGAAGCTGAACACAATAATGGCCGTCGTTTTGTATGTAATAAATGTGGAAAGAGTTTTAAACATAAGCAATTATTACAACGTCACCAACTTGTACATTCTGATGATCGACCTTATGTATGCAAATCATGTAATGCTAGCTTTAAAACAAAAGCAAATTTAATTAATCACCAGTCTACACATACAGGAGAGAAAAAATATTTTTGTGAAATATGTGGTCAACAGTTTGCTCATAAAACCAGTTTGACTTTACATTACAGGTGGcataccggtcataaaccatatacttgtgaagtttgtcacaaaagtttttctcaaaatggtaatcttcaagagcatatgcgcatacatactggagaaaaaccatactgttgtgattattgtggacgtaaattcacaacttcgtcacaatttaaattacatgttaaacgtcatactggtgaacgtccatggaaatgtgagttttgtgccaaatgttttctacataaagacacctggaagtgtcatgtacgtaggcataaaggagagagaccttTCCAATGTGCCCATTGTAATCGTGGATTTACAGAACAATGGGCTTTAAAAAAACATCTTCGGTTACACACAGGTGAAAAACCATATTCTTGTGATGTTTGTGGAAAAGCTTTTGCTGATTGTTCTAACTTAACAAAACATAAAAAGGTGCATAGAGAAAGCAAAGTTTTAACATTAGGTGAAATAACTGAAGGTTCTGCAGTTGGTGAAGTATGGCAAATCTTACCAGGCTCCCAAGAGACAGATGAAAATTCATTAAGTGATCAAATGGCTCAAGTCATCACGGCGGAAGAAACATCTGCAGATGGAATACAACAAATTATTTATGTCTCTTATCAAGATCCTGATGATCCCAATTTATCAAGAACATTGCATTTTGTTGATGCTGGTATGATGCGTGAAAAAGAAGGAATGGTAAGCACTCCAGGGCAATCTTTACCTCATTTGGATGTTGAAAATGAAATACTCCCCGATCAAACGCATAATCACCACACAGCCAATACTTCGGATGAACGAATGGATATGGAACTATCGGAACCAGATTTACAATTACAAATTACAGATGAAGAAGGTAATCCAATTCCACTTTCTATACAAGACGCAAGACAATTATTATCACAAGGACAATTTGTTAGTCAGTTAAATGATGGTCAAACTATTAGAGTTCATTCAGGTGTAATCACTCAAGAGTTTGCAGGATCTTTAGGTGTTCATGTAAATCAGAATAGTAATGTATCAACAGTGAATAATACTGCAATCAATGAAGTAAATAAAACAAGTTCAATATCAACTATACAAACGGATGCAGAAGCAATTGTCAAAGCATTAGAAGATGAAGATACGGATGCAACAGCTGTTGCTACTATAAATCAAATGGGAGGTGAAGATCAGGCAGAAATATCAGATGGACAACAAGCTATAGAATTTACAACACAGGATGGACAAAAAGTTCGACTTGTTGCTTCATACCATGTTGATCCATTGCAACTTGCTTCAGAGTACCTGACTATTGTATAA
Protein Sequence: MAVVRLYDSTICRLCAEDNGNGELLYRGEGDDTDLSSMVNRYLPLKIRDDGKLPRTICPGCNIQLEATVQFFKLLVDGQQKIREMWKHQVELQRKAERERLRVERQNTEVITGLPDSDNNIRNSEDNQLEQQIIIKVMPDGSLYTAEHEISLQMEGLIKPRRKRGRPPKVHTDMESKIILKEDIIEGVSQGEEDKQEEEIEEVDGDGRRRRKRKVPKRFMEAVQGKELERIFKEEGVIDEEEDEEADHFDDSEERLNVSIPDGQEEIIGHLETEEGKDLGELVIVNRGRGRGRPKLRRRKNKFTCQLCGRGFLQRSRYIVHKSFHKSVKYECRECKKLFTNKDNFALHQKMTQHTGCGITEISDEHDNHQNQIVENTNSVSNNASPNETKDSGNTFTNNQNMEIVTETSDKSVTNNSDTNIMCGQCEKTFHTKESCELHVKIIHENEKPFICNICNKSFSYQTNLKGHMLTHEKKSKLNYILVFNNIKKKKKKXXXXXXXXXXXXXXXNHPSSVVYHKEAEHNNGRRFVCNKCGKSFKHKQLLQRHQLVHSDDRPYVCKSCNASFKTKANLINHQSTHTGEKKYFCEICGQQFAHKTSLTLHYRWHTGHKPYTCEVCHKSFSQNGNLQEHMRIHTGEKPYCCDYCGRKFTTSSQFKLHVKRHTGERPWKCEFCAKCFLHKDTWKCHVRRHKGERPFQCAHCNRGFTEQWALKKHLRLHTGEKPYSCDVCGKAFADCSNLTKHKKVHRESKVLTLGEITEGSAVGEVWQILPGSQETDENSLSDQMAQVITAEETSADGIQQIIYVSYQDPDDPNLSRTLHFVDAGMMREKEGMVSTPGQSLPHLDVENEILPDQTHNHHTANTSDERMDMELSEPDLQLQITDEEGNPIPLSIQDARQLLSQGQFVSQLNDGQTIRVHSGVITQEFAGSLGVHVNQNSNVSTVNNTAINEVNKTSSISTIQTDAEAIVKALEDEDTDATAVATINQMGGEDQAEISDGQQAIEFTTQDGQKVRLVASYHVDPLQLASEYLTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01090139;
90% Identity: iTF_01512965;
80% Identity: -