Vnig013530.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- HINFP
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000040.1:1420181-1421635[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.12 2.2e+02 2.6 0.0 27 45 70 88 66 92 0.88 2 9 4.5 8.1e+03 -2.4 0.0 27 53 164 190 156 191 0.75 3 9 2.6 4.6e+03 -1.6 0.2 25 34 192 201 182 213 0.73 4 9 0.00098 1.8 9.3 0.0 16 44 211 238 202 242 0.84 5 9 0.0011 2 9.2 0.0 21 45 243 267 238 270 0.90 6 9 0.05 90 3.9 0.3 22 45 272 295 267 301 0.85 7 9 0.34 6e+02 1.2 0.1 23 44 336 357 334 361 0.86 8 9 0.00034 0.61 10.8 0.1 21 52 362 393 359 395 0.88 9 9 2.2 4e+03 -1.4 0.0 21 43 418 440 413 442 0.80
Sequence Information
- Coding Sequence
- atggctaatataaaagttgaatttcctgatAATACTTCAAATTTGGATTACACTCAGATTTGTAGAGCGTGTTTATTACAAGAAGAAAacttaatatcaattttttctgaaaaacttGTGCCTGATAAAGTTATTTCTATCGTTGAAATGATTACGGCTTGTGCTTCTATACAGCTATTTGAAGGAGACGGTTTTCCATCGCAACTGTGCTCAAACTGCTTTAATCAATTGCGCCAATCGTACGCATTTAGACAGCAATTTGAAAAAGCAGATGCTACTCTTCATAACTATGCGTATAAAAGTCCCGAGGATACTTCATATTTTTTAGACGATACTCAGTCATCGTTACACGACAACGAtgaacctttaaaaaaaattaaagatgaagtaatatataaaaaagactGTGTTAAAACAGAATctgaaaaatgtaacaaaaatcttaagaaaaaaactagtaaattaaagaaaattgaatCAAcctttcaatgtaaaaaatgtggTAATATATTCGAAAGTAACATAATTTTAAGAGATCACATAAAAGAACAGCATTCATACAAAAGAGGAAAGAACACGTGTACAATTTGTTCAAAGTCGTTTACCACGTCGAAGTTGAAAGTGCATATGCGAAGTCATACTCAAGAAAAGCCATATGCATGTAATATTTGTGGCCTCACCTTTACCATCGAGGGCAATTTAAGACGTCATAAGATGATACATACAGGGGAACGACCTCATAAGTGTCCGATTTGTAAAAAAGGTTTTATCCAGTCTTTCACTTTAGCTGAACATTTAAGAGTTCATACTCGCGAAACTCCATTCCAATGCActatttgttcaaaaaaatttgcTCAGTCAGGCCGATATCGTTTGCATATAAAAAGACATGGTGAACCTGGAAATGATCCAAAAAGTGATACCAAATTTCTCTGCAGTGAGTGTGgaaaatcatttacaacaatcGGAGGTCTAAAAATGCATGCCGTTATTCATTTGGGGATAAAACCGTATCAGTGTACCATTTGTAACAAATCATTTAGACATGCAGTGTCACTGAAAACGCATTCGTTATTACATACAGGGGAAAAGCCATTTTCATGTTCTTTGTGCGAGAAGGTTTTCACGCAAAGCCAACATTTGAAGTATCATGTGAAAATTCATTCGGGGGAAAAACCATACGAATGTAGTTTTTGTGGTAAACGATTTGCTTCCAAGGGAAATATGACCGTTCATATTAGAACTCATACAGGTGAAACGCCGTATCACTGTTCGGTTTGTGGAAAAGGATTTTATGATTCCAGCAGTATGAAAAAGCACCAGAAAGGAcatggaaataaaataaatgcagAAAAAAACAGTGAACATTAA
- Protein Sequence
- MANIKVEFPDNTSNLDYTQICRACLLQEENLISIFSEKLVPDKVISIVEMITACASIQLFEGDGFPSQLCSNCFNQLRQSYAFRQQFEKADATLHNYAYKSPEDTSYFLDDTQSSLHDNDEPLKKIKDEVIYKKDCVKTESEKCNKNLKKKTSKLKKIESTFQCKKCGNIFESNIILRDHIKEQHSYKRGKNTCTICSKSFTTSKLKVHMRSHTQEKPYACNICGLTFTIEGNLRRHKMIHTGERPHKCPICKKGFIQSFTLAEHLRVHTRETPFQCTICSKKFAQSGRYRLHIKRHGEPGNDPKSDTKFLCSECGKSFTTIGGLKMHAVIHLGIKPYQCTICNKSFRHAVSLKTHSLLHTGEKPFSCSLCEKVFTQSQHLKYHVKIHSGEKPYECSFCGKRFASKGNMTVHIRTHTGETPYHCSVCGKGFYDSSSMKKHQKGHGNKINAEKNSEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511870;
- 90% Identity
- iTF_01511271;
- 80% Identity
- iTF_01511271;