Vnig013531.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- Hinfp
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000040.1:1422445-1423796[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.16 2.8e+02 2.3 0.0 27 45 21 39 17 43 0.88 2 7 0.00027 0.48 11.2 0.1 13 44 164 194 162 198 0.85 3 7 0.001 1.8 9.3 0.1 21 46 199 224 197 228 0.90 4 7 0.19 3.4e+02 2.0 0.2 22 45 228 251 225 257 0.84 5 7 0.33 5.8e+02 1.3 0.1 23 44 292 313 290 318 0.86 6 7 0.00019 0.33 11.7 0.3 21 47 318 344 315 350 0.87 7 7 1.4 2.5e+03 -0.7 0.0 21 43 374 396 366 401 0.81
Sequence Information
- Coding Sequence
- ATGATTACGGCTTGTGCTTCTATTCAGctGTTTGAGGGAGATGGTTTTCCGTCACAACTGTGTTCAAACTGCTTTGATCAGCTGCGCCAATCGTATGCATTTAGACAGCAATTTGAAAAAGCAAATGCAACTCTTCATAATCATGCATATAAAAGACTTCAGGATACTTCACATTTTTTAGATGATACCCAGACATCGTTACAAGCCGACGATGAAcccttgaaaaaaattaaagatgaagaaatacataaaaaagacTCTGTTAAAGCAGAATCGGAAAAGAGTAATAAAAACCTTAAGCAGAAaaccagaaaattaaaaaaaattgaaaatattgagtCTAAATCATCCTTTCAATGCAAAAAATGCGGTGATAAATTCGAAAGTAACATAATTTTAAGAGATCACATTAAAGAACAACATCCATATAAAAAAGGAAAGCACAAGTGTACAGTTTGTTCAAAATCCTTTATCATGTCGTATTTGAAAGAGCATATGCGCAGTCATACTCAAGAAAAACCATATGCATGTAATATTTGTGGCCTCACTTTTACCAGCAAGGGCAATTTAAGACGTCATAAGATGATACATACAGGAGAACGACCTCATAAGTGCCCGATTTGCAAAAAAGGTTTTATCCAATCTTTCACTTTAGCCGAACATTTAAGGGTTCACACTCGCGAAACTCCATTCCAGTGTActatttgttcaaaaaaatttgcCCATTCAAGCCAATTTCGTTTGCATGTAAAAAGACATGACGAACCTGGAAATGATACGAAGTGTGATACAAAATTTCTCTGCAGTGAATGTGgaaaatcatttacaacaatcGGAGGACTAAAAATGCATGCCGTCATTCATTTAGGGATAAAACCGTATCAGTGTACTATTTGTAACAAATCATTTAGACATGCATTGTCACTGAAAACACATTCGTTATTACACACCGGGGAAAAGCCGTTTTCATGTTCTTTGTGCCAGAAGGTTTTCACGCAAAGCCAACATTTAAAGTGTCATTTGAGGACGCATACAGGCGAAAAACCATACGAATGCAGTTTTTGTGGTAAAGGGTTTGCTTCCAAAGGAAATATGACTGTACATGCAAGAGCTCATACAGGTGAAACACCGTATCACTGTTCGGTTTGTGGAAAAGGATTTTATGATTCCAGCAGTatgaaaaaacatcaaaaaggACATGAAATTAAAACTAACGCAGGTTTGCGCGATGAAACTGTTCCACAGGATTAA
- Protein Sequence
- MITACASIQLFEGDGFPSQLCSNCFDQLRQSYAFRQQFEKANATLHNHAYKRLQDTSHFLDDTQTSLQADDEPLKKIKDEEIHKKDSVKAESEKSNKNLKQKTRKLKKIENIESKSSFQCKKCGDKFESNIILRDHIKEQHPYKKGKHKCTVCSKSFIMSYLKEHMRSHTQEKPYACNICGLTFTSKGNLRRHKMIHTGERPHKCPICKKGFIQSFTLAEHLRVHTRETPFQCTICSKKFAHSSQFRLHVKRHDEPGNDTKCDTKFLCSECGKSFTTIGGLKMHAVIHLGIKPYQCTICNKSFRHALSLKTHSLLHTGEKPFSCSLCQKVFTQSQHLKCHLRTHTGEKPYECSFCGKGFASKGNMTVHARAHTGETPYHCSVCGKGFYDSSSMKKHQKGHEIKTNAGLRDETVPQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511297; iTF_01511271; iTF_01511876; iTF_01530774; iTF_01531627;
- 90% Identity
- iTF_01511297;
- 80% Identity
- iTF_01511297;