Vnig010273.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000025.1:2327030-2330808[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.89 1.6e+03 -0.1 0.0 20 43 293 316 285 320 0.73 2 13 0.0042 7.4 7.3 0.0 21 48 322 348 319 351 0.88 3 13 0.071 1.3e+02 3.4 0.1 21 48 350 377 345 382 0.84 4 13 0.002 3.6 8.3 0.0 19 48 376 405 367 411 0.80 5 13 0.05 89 3.9 0.1 22 46 624 648 619 653 0.85 6 13 0.062 1.1e+02 3.6 0.0 20 48 678 705 661 710 0.81 7 13 0.2 3.6e+02 1.9 0.0 21 49 707 735 700 740 0.84 8 13 0.36 6.4e+02 1.1 0.0 21 52 735 766 733 767 0.87 9 13 1.1 2e+03 -0.4 0.1 21 43 763 785 753 794 0.76 10 13 0.016 28 5.5 0.0 21 47 819 844 813 852 0.86 11 13 0.011 19 6.0 0.1 21 52 875 906 863 913 0.88 12 13 0.96 1.7e+03 -0.2 0.1 21 36 931 946 923 957 0.76 13 13 0.2 3.6e+02 1.9 0.2 21 44 959 982 954 986 0.89
Sequence Information
- Coding Sequence
- atgaataaatcaaTGTTCAACGGTGGAAATTGTAAAGACATTTGTAGATTGTGTCTTTCAAAatatgctataaacaatatatttttgtattcgcCGGAACTGAAAGGGCAAATCGCAGATGTAATTATAAAATGTGCTCCCGTTAATataataaaatatgacAAGCTGCCCGATTTGATATGCAACGCTTGCTACGTTCAGATATCAAccattcaaaaatttcaaacactcgcattaaaatctgaaatgctACTGCGTGACTACCTCGaacaattaacaattgataAAGAGTTagattttgaaacatttattcTAGAAGCTTCTAAAATTGAGAATGATTTAAATAACCGTGCACGAAACTTATCTGAAAGCGAGTTAAATTCTGAAAAATCCATTCTAGAAACATCGGAATTTTCTAGTGTCGAAACAAATGAATTGGATTCTAATATTGAGTATGTTAAATATGAAACAGCAAAAAATGACGAtactgaaattaataattggaaTAAATCAAATCACGGCGACGATAGCGACAAAAGAAAACCTGACGATAAAGATAATaattcatgtgatttttttggaGATAAACCAGTTAAAAGTGGATGTATTTTTAAAGTAGTTAGTAGCAAACCAAaacctagaaaaaaaattgacaccagaatgcaaacaaaacaaaaaacagacGAAAGCGTAAATAAAGTTAAATTGACCAAATCTAAAAATAGTCCCGAAATATCATCtggtaaaaatgtaaaaaatcttgATAGCTTAAACGTAACATCTCCAACAACTAAATTCTCAAAACTGCACCACTGTAATATATGCAGTAAACATTTTACAAGATtggcaaatttaaaaattcataaacgCAAACattctggtgagaaaccatacgaATGTAACATTTGTGACAAAACTTTCTCTCATACCAACACTTTAAAGTTACACAAGTTGATGCATACCGGAGAGAAACCGTATTTATGTGATATTTGCAGCAAGTCGTTTACGGATTCGAGTAATTTAAATAGACACAAACTTAAACATACAGGCGAGAAACCTCATCGATGTGAAGTTTGTAGCAAGTGTTTTACTACATCTACAGGTCTCAACAGGCACAGACTTTTACATACCGGAGAAAAACCGTTCGAATGTGATGTTTGTTATAAACGTTTCAACAAAAGTGCAAATTTATATGCTCACAAACTGTTGCATTCTGGGGAGAAACCGCATAAATGTGACGTGTGCGACATGTCATTAGACAATTACTTATTACAGATAGCAAAAGACGATAATTTACCAAATTCAATATGTAAATTATGCTGCGTGCAATTAACAGAAATTCGTAAATTCCAAAAGCAAGCGGAAGAGTCTGAAAAAGCTTTACGTCATTATTTGCAGTGGTCACAAATGGACAGTGGCTTGGTATCTAAAACCGAAACGAGTGGAAAAGATCCAAATTTAGTTTACGTAAAATGCGAAACCTTGGAAAGCGGGGACACAGTTCAGTCTTCAGTGAAGGAAGATTTCAACTGGCAAGGAACAAACAGTGAcgacagccttaaaaataataaaatcgattcattaaatcaaaacaaaaaaagccTGGATGTCAAtcgggaaatttcaattttcgaattttcaaatgaaaattttaatacggACGAAATAACGGCAACGCTGggtgaagatataaaaaaagaaaatcaagaCAGTTTGAAAGATGGTCACGAAACGAAACCATCTTGTTTTAGCGACACCCATATTATGTCTACCAAAAAACCGTCGACATTTAAATACCGATGCAACATTTGCAAAAAGTATTTCAGTGAATTGAGTCTTTTCAAATTGCACAAACAGCTTCACTCCAGGGAAAAACTAAACAAGTGTGAAATCTGTAATAAATGCTTCCTAAAATCTGTTGATTTAAGAAAACATATGTTACTGCATACTGGTACCAAATTGCATCAGTGTGAAGTTTGCAGCAAAAGATTCACTCATTCGAATTCGTTAAAAATTCACAAACGTGTACATACAGGCGAGAAACCGTACTTATGCGATGTCTGTAGTAAATCGTTCACGGATTCCAGTAAATTGAATCGACACAAACTCaaacataccggtgagaaaccgcATCATTGTGATCTTTGCAGCAAAGGTTTCACTACATCCGCGGACGTGAAGCGACACAAAATTCTGCACACCGGTGAGAAACCTTTCAAATGTGACGTTTGCGATAAGTGTTTTTCAAATCCTACCAATTTAAATTCGCATAAGAAACTGCACACGGGCGAGAAACCGTTtcaatgtgatatttgtaataaatgctTTACAAGATTGACTCACATGATAAGACATAAACGAGTGCATACGGGCGAAAAACCTTATAAATGTGACGCTTGTGAGAAGAGTTTCTCGCACGTTGATAGTCTGAAAATCCACAAACTGTCACATACTGGGGAAAAACCTTACTTGTGCGACATTTGTTGCAAATCTTTCAGTAATGCCAGCAATTTAAATCGACATAAACTACAACATACAGATGATAAACCGtttcaatgtgacgtttgtagcAAATCGTTCACAACAACCAACACGTTGAATAAACACAAATTCGTACATACAGGAGAAAAACCatttcagtgtgacgtttgtagtaAATGCTTTAAAAACTCTAGTAATTTATATGCTCACAAACGACTACATACTGGAGAAAAACCGcataagtgtgacgtttgcaataaaGCCTTTTCTAGAATTACACACTTGACTGGACATAAACGTATACACactggcgagaaaccgtatcagtgtagTATTTGTCATAAAAGTTTTTCCCATACACTTAGCTTGAAAATTCACAAACTGacgcatactggtgaaaaaccatatcgaTGTGAAGTCTGCAGTAAATGTTTTACTAGCTCTAGTAATTTAAATACTCATAAAAGAGTACATATAtgtgaataa
- Protein Sequence
- MNKSMFNGGNCKDICRLCLSKYAINNIFLYSPELKGQIADVIIKCAPVNIIKYDKLPDLICNACYVQISTIQKFQTLALKSEMLLRDYLEQLTIDKELDFETFILEASKIENDLNNRARNLSESELNSEKSILETSEFSSVETNELDSNIEYVKYETAKNDDTEINNWNKSNHGDDSDKRKPDDKDNNSCDFFGDKPVKSGCIFKVVSSKPKPRKKIDTRMQTKQKTDESVNKVKLTKSKNSPEISSGKNVKNLDSLNVTSPTTKFSKLHHCNICSKHFTRLANLKIHKRKHSGEKPYECNICDKTFSHTNTLKLHKLMHTGEKPYLCDICSKSFTDSSNLNRHKLKHTGEKPHRCEVCSKCFTTSTGLNRHRLLHTGEKPFECDVCYKRFNKSANLYAHKLLHSGEKPHKCDVCDMSLDNYLLQIAKDDNLPNSICKLCCVQLTEIRKFQKQAEESEKALRHYLQWSQMDSGLVSKTETSGKDPNLVYVKCETLESGDTVQSSVKEDFNWQGTNSDDSLKNNKIDSLNQNKKSLDVNREISIFEFSNENFNTDEITATLGEDIKKENQDSLKDGHETKPSCFSDTHIMSTKKPSTFKYRCNICKKYFSELSLFKLHKQLHSREKLNKCEICNKCFLKSVDLRKHMLLHTGTKLHQCEVCSKRFTHSNSLKIHKRVHTGEKPYLCDVCSKSFTDSSKLNRHKLKHTGEKPHHCDLCSKGFTTSADVKRHKILHTGEKPFKCDVCDKCFSNPTNLNSHKKLHTGEKPFQCDICNKCFTRLTHMIRHKRVHTGEKPYKCDACEKSFSHVDSLKIHKLSHTGEKPYLCDICCKSFSNASNLNRHKLQHTDDKPFQCDVCSKSFTTTNTLNKHKFVHTGEKPFQCDVCSKCFKNSSNLYAHKRLHTGEKPHKCDVCNKAFSRITHLTGHKRIHTGEKPYQCSICHKSFSHTLSLKIHKLTHTGEKPYRCEVCSKCFTSSSNLNTHKRVHICE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511042;
- 90% Identity
- iTF_01511042;
- 80% Identity
- iTF_01511042;