Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000025.1:2327030-2330808[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.0012 0.034 15.2 8.4 1 23 270 292 270 292 0.97

2 19 6.1e-05 0.0017 19.3 3.2 1 23 298 320 298 320 0.98

3 19 1.9e-06 5.2e-05 24.0 1.6 1 23 326 348 326 348 0.96

4 19 0.00031 0.0087 17.0 5.3 1 23 354 376 354 376 0.97

5 19 0.00069 0.019 16.0 0.9 1 23 382 404 382 404 0.96

6 19 0.0032 0.087 13.9 2.8 1 23 599 621 599 621 0.97

7 19 0.0019 0.054 14.5 2.8 2 23 628 649 627 649 0.97

8 19 0.00022 0.006 17.5 5.5 1 23 655 677 655 677 0.98

9 19 2.3e-05 0.00064 20.6 1.9 1 23 683 705 683 705 0.95

10 19 0.012 0.34 12.0 3.2 1 23 711 733 711 733 0.94

11 19 4.1e-06 0.00011 23.0 3.5 1 23 739 761 739 761 0.98

12 19 4.7e-05 0.0013 19.6 6.4 1 23 767 789 767 789 0.99

13 19 0.00058 0.016 16.2 1.8 1 23 795 817 795 817 0.98

14 19 0.00068 0.019 16.0 2.9 1 23 823 845 823 845 0.94

15 19 0.0002 0.0055 17.6 2.7 1 23 851 873 851 873 0.97

16 19 8.8e-06 0.00024 21.9 4.2 1 23 879 901 879 901 0.98

17 19 0.00029 0.008 17.1 3.8 1 23 907 929 907 929 0.98

18 19 0.00049 0.013 16.4 5.9 1 23 935 957 935 957 0.99

19 19 2.1e-06 5.8e-05 23.9 4.3 1 23 963 985 963 985 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.0012	0.034	15.2	8.4	1	23	270	292	270	292	0.97
2	19	6.1e-05	0.0017	19.3	3.2	1	23	298	320	298	320	0.98
3	19	1.9e-06	5.2e-05	24.0	1.6	1	23	326	348	326	348	0.96
4	19	0.00031	0.0087	17.0	5.3	1	23	354	376	354	376	0.97
5	19	0.00069	0.019	16.0	0.9	1	23	382	404	382	404	0.96
6	19	0.0032	0.087	13.9	2.8	1	23	599	621	599	621	0.97
7	19	0.0019	0.054	14.5	2.8	2	23	628	649	627	649	0.97
8	19	0.00022	0.006	17.5	5.5	1	23	655	677	655	677	0.98
9	19	2.3e-05	0.00064	20.6	1.9	1	23	683	705	683	705	0.95
10	19	0.012	0.34	12.0	3.2	1	23	711	733	711	733	0.94
11	19	4.1e-06	0.00011	23.0	3.5	1	23	739	761	739	761	0.98
12	19	4.7e-05	0.0013	19.6	6.4	1	23	767	789	767	789	0.99
13	19	0.00058	0.016	16.2	1.8	1	23	795	817	795	817	0.98
14	19	0.00068	0.019	16.0	2.9	1	23	823	845	823	845	0.94
15	19	0.0002	0.0055	17.6	2.7	1	23	851	873	851	873	0.97
16	19	8.8e-06	0.00024	21.9	4.2	1	23	879	901	879	901	0.98
17	19	0.00029	0.008	17.1	3.8	1	23	907	929	907	929	0.98
18	19	0.00049	0.013	16.4	5.9	1	23	935	957	935	957	0.99
19	19	2.1e-06	5.8e-05	23.9	4.3	1	23	963	985	963	985	0.99

Sequence Information

Coding Sequence: atgaataaatcaaTGTTCAACGGTGGAAATTGTAAAGACATTTGTAGATTGTGTCTTTCAAAatatgctataaacaatatatttttgtattcgcCGGAACTGAAAGGGCAAATCGCAGATGTAATTATAAAATGTGCTCCCGTTAATataataaaatatgacAAGCTGCCCGATTTGATATGCAACGCTTGCTACGTTCAGATATCAAccattcaaaaatttcaaacactcgcattaaaatctgaaatgctACTGCGTGACTACCTCGaacaattaacaattgataAAGAGTTagattttgaaacatttattcTAGAAGCTTCTAAAATTGAGAATGATTTAAATAACCGTGCACGAAACTTATCTGAAAGCGAGTTAAATTCTGAAAAATCCATTCTAGAAACATCGGAATTTTCTAGTGTCGAAACAAATGAATTGGATTCTAATATTGAGTATGTTAAATATGAAACAGCAAAAAATGACGAtactgaaattaataattggaaTAAATCAAATCACGGCGACGATAGCGACAAAAGAAAACCTGACGATAAAGATAATaattcatgtgatttttttggaGATAAACCAGTTAAAAGTGGATGTATTTTTAAAGTAGTTAGTAGCAAACCAAaacctagaaaaaaaattgacaccagaatgcaaacaaaacaaaaaacagacGAAAGCGTAAATAAAGTTAAATTGACCAAATCTAAAAATAGTCCCGAAATATCATCtggtaaaaatgtaaaaaatcttgATAGCTTAAACGTAACATCTCCAACAACTAAATTCTCAAAACTGCACCACTGTAATATATGCAGTAAACATTTTACAAGATtggcaaatttaaaaattcataaacgCAAACattctggtgagaaaccatacgaATGTAACATTTGTGACAAAACTTTCTCTCATACCAACACTTTAAAGTTACACAAGTTGATGCATACCGGAGAGAAACCGTATTTATGTGATATTTGCAGCAAGTCGTTTACGGATTCGAGTAATTTAAATAGACACAAACTTAAACATACAGGCGAGAAACCTCATCGATGTGAAGTTTGTAGCAAGTGTTTTACTACATCTACAGGTCTCAACAGGCACAGACTTTTACATACCGGAGAAAAACCGTTCGAATGTGATGTTTGTTATAAACGTTTCAACAAAAGTGCAAATTTATATGCTCACAAACTGTTGCATTCTGGGGAGAAACCGCATAAATGTGACGTGTGCGACATGTCATTAGACAATTACTTATTACAGATAGCAAAAGACGATAATTTACCAAATTCAATATGTAAATTATGCTGCGTGCAATTAACAGAAATTCGTAAATTCCAAAAGCAAGCGGAAGAGTCTGAAAAAGCTTTACGTCATTATTTGCAGTGGTCACAAATGGACAGTGGCTTGGTATCTAAAACCGAAACGAGTGGAAAAGATCCAAATTTAGTTTACGTAAAATGCGAAACCTTGGAAAGCGGGGACACAGTTCAGTCTTCAGTGAAGGAAGATTTCAACTGGCAAGGAACAAACAGTGAcgacagccttaaaaataataaaatcgattcattaaatcaaaacaaaaaaagccTGGATGTCAAtcgggaaatttcaattttcgaattttcaaatgaaaattttaatacggACGAAATAACGGCAACGCTGggtgaagatataaaaaaagaaaatcaagaCAGTTTGAAAGATGGTCACGAAACGAAACCATCTTGTTTTAGCGACACCCATATTATGTCTACCAAAAAACCGTCGACATTTAAATACCGATGCAACATTTGCAAAAAGTATTTCAGTGAATTGAGTCTTTTCAAATTGCACAAACAGCTTCACTCCAGGGAAAAACTAAACAAGTGTGAAATCTGTAATAAATGCTTCCTAAAATCTGTTGATTTAAGAAAACATATGTTACTGCATACTGGTACCAAATTGCATCAGTGTGAAGTTTGCAGCAAAAGATTCACTCATTCGAATTCGTTAAAAATTCACAAACGTGTACATACAGGCGAGAAACCGTACTTATGCGATGTCTGTAGTAAATCGTTCACGGATTCCAGTAAATTGAATCGACACAAACTCaaacataccggtgagaaaccgcATCATTGTGATCTTTGCAGCAAAGGTTTCACTACATCCGCGGACGTGAAGCGACACAAAATTCTGCACACCGGTGAGAAACCTTTCAAATGTGACGTTTGCGATAAGTGTTTTTCAAATCCTACCAATTTAAATTCGCATAAGAAACTGCACACGGGCGAGAAACCGTTtcaatgtgatatttgtaataaatgctTTACAAGATTGACTCACATGATAAGACATAAACGAGTGCATACGGGCGAAAAACCTTATAAATGTGACGCTTGTGAGAAGAGTTTCTCGCACGTTGATAGTCTGAAAATCCACAAACTGTCACATACTGGGGAAAAACCTTACTTGTGCGACATTTGTTGCAAATCTTTCAGTAATGCCAGCAATTTAAATCGACATAAACTACAACATACAGATGATAAACCGtttcaatgtgacgtttgtagcAAATCGTTCACAACAACCAACACGTTGAATAAACACAAATTCGTACATACAGGAGAAAAACCatttcagtgtgacgtttgtagtaAATGCTTTAAAAACTCTAGTAATTTATATGCTCACAAACGACTACATACTGGAGAAAAACCGcataagtgtgacgtttgcaataaaGCCTTTTCTAGAATTACACACTTGACTGGACATAAACGTATACACactggcgagaaaccgtatcagtgtagTATTTGTCATAAAAGTTTTTCCCATACACTTAGCTTGAAAATTCACAAACTGacgcatactggtgaaaaaccatatcgaTGTGAAGTCTGCAGTAAATGTTTTACTAGCTCTAGTAATTTAAATACTCATAAAAGAGTACATATAtgtgaataa
Protein Sequence: MNKSMFNGGNCKDICRLCLSKYAINNIFLYSPELKGQIADVIIKCAPVNIIKYDKLPDLICNACYVQISTIQKFQTLALKSEMLLRDYLEQLTIDKELDFETFILEASKIENDLNNRARNLSESELNSEKSILETSEFSSVETNELDSNIEYVKYETAKNDDTEINNWNKSNHGDDSDKRKPDDKDNNSCDFFGDKPVKSGCIFKVVSSKPKPRKKIDTRMQTKQKTDESVNKVKLTKSKNSPEISSGKNVKNLDSLNVTSPTTKFSKLHHCNICSKHFTRLANLKIHKRKHSGEKPYECNICDKTFSHTNTLKLHKLMHTGEKPYLCDICSKSFTDSSNLNRHKLKHTGEKPHRCEVCSKCFTTSTGLNRHRLLHTGEKPFECDVCYKRFNKSANLYAHKLLHSGEKPHKCDVCDMSLDNYLLQIAKDDNLPNSICKLCCVQLTEIRKFQKQAEESEKALRHYLQWSQMDSGLVSKTETSGKDPNLVYVKCETLESGDTVQSSVKEDFNWQGTNSDDSLKNNKIDSLNQNKKSLDVNREISIFEFSNENFNTDEITATLGEDIKKENQDSLKDGHETKPSCFSDTHIMSTKKPSTFKYRCNICKKYFSELSLFKLHKQLHSREKLNKCEICNKCFLKSVDLRKHMLLHTGTKLHQCEVCSKRFTHSNSLKIHKRVHTGEKPYLCDVCSKSFTDSSKLNRHKLKHTGEKPHHCDLCSKGFTTSADVKRHKILHTGEKPFKCDVCDKCFSNPTNLNSHKKLHTGEKPFQCDICNKCFTRLTHMIRHKRVHTGEKPYKCDACEKSFSHVDSLKIHKLSHTGEKPYLCDICCKSFSNASNLNRHKLQHTDDKPFQCDVCSKSFTTTNTLNKHKFVHTGEKPFQCDVCSKCFKNSSNLYAHKRLHTGEKPHKCDVCNKAFSRITHLTGHKRIHTGEKPYQCSICHKSFSHTLSLKIHKLTHTGEKPYRCEVCSKCFTSSSNLNTHKRVHICE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511875;
90% Identity: iTF_01511875;
80% Identity: iTF_01511875;