Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000015.1:5023713-5028013[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00094 1.7 9.4 0.1 21 47 232 258 223 265 0.85

2 14 4.4 7.8e+03 -2.3 0.0 22 44 261 283 258 293 0.66

3 14 2.7 4.8e+03 -1.7 0.0 21 44 288 311 282 314 0.84

4 14 0.3 5.4e+02 1.4 0.0 21 43 377 399 375 410 0.86

5 14 0.84 1.5e+03 -0.1 0.1 21 46 405 430 402 437 0.81

6 14 0.76 1.4e+03 0.1 0.1 21 31 433 443 425 457 0.82

7 14 0.027 48 4.7 0.0 21 46 461 486 449 489 0.86

8 14 0.0078 14 6.5 0.1 20 46 876 902 859 908 0.79

9 14 0.11 2e+02 2.8 0.0 21 46 905 930 901 933 0.91

10 14 0.42 7.6e+02 0.9 0.1 21 44 933 956 925 964 0.83

11 14 0.069 1.2e+02 3.4 0.0 11 41 964 994 957 1001 0.79

12 14 0.33 5.8e+02 1.3 0.1 21 51 1057 1087 1055 1090 0.85

13 14 0.71 1.3e+03 0.2 0.2 21 31 1085 1095 1080 1111 0.79

14 14 0.053 95 3.8 0.0 21 45 1113 1137 1101 1141 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00094	1.7	9.4	0.1	21	47	232	258	223	265	0.85
2	14	4.4	7.8e+03	-2.3	0.0	22	44	261	283	258	293	0.66
3	14	2.7	4.8e+03	-1.7	0.0	21	44	288	311	282	314	0.84
4	14	0.3	5.4e+02	1.4	0.0	21	43	377	399	375	410	0.86
5	14	0.84	1.5e+03	-0.1	0.1	21	46	405	430	402	437	0.81
6	14	0.76	1.4e+03	0.1	0.1	21	31	433	443	425	457	0.82
7	14	0.027	48	4.7	0.0	21	46	461	486	449	489	0.86
8	14	0.0078	14	6.5	0.1	20	46	876	902	859	908	0.79
9	14	0.11	2e+02	2.8	0.0	21	46	905	930	901	933	0.91
10	14	0.42	7.6e+02	0.9	0.1	21	44	933	956	925	964	0.83
11	14	0.069	1.2e+02	3.4	0.0	11	41	964	994	957	1001	0.79
12	14	0.33	5.8e+02	1.3	0.1	21	51	1057	1087	1055	1090	0.85
13	14	0.71	1.3e+03	0.2	0.2	21	31	1085	1095	1080	1111	0.79
14	14	0.053	95	3.8	0.0	21	45	1113	1137	1101	1141	0.89

Sequence Information

Coding Sequence: ATGGATGAAACtaatataatacaaattattaatgcTGACGATGTTTGCCGTGCTTGTTTGTCTGAAGGAGAATTACAACCTATTTTTATGACTAGACTAGAAGAGAGTCATTTAACATTATCAGAAATGTTAATGGCGTGTACTTCAgttaagGCATCTGAAGAAGACGGTTTACCCAGTAAAATGTGTTTCTCATGCATTGAACAAATGAAACAAGCATTTTCTTTCAAAAGACAATGTGAAGAAACAGATGCAAATCTCCGTTTGTATCTTACCAATCGAATATCTACAAAATGGGGAAATTCGCTCACCGACCGTGCAAAGAAAGAAATAATGGATGAGCATCACTCAGATGAATTAAACGATGTTGATAATGAAAATACAGTCGAATAtgacatattttcaaatttaaatgaaatgagttcaaatgaaaataattcagATAATCAACAAAAGGATTCCATTGTTCAAATAGCAAGACGTAAAAAGGACAAAAAAACACGACGCTCCAGAACAGCGGGTGTGcgaaaaaataacaatgaatgtGAAAAATGTAATCTGCAGTTTGATACACGATCTGAATATTTACTTCACGCAAGAAGCAAAAGACATCAGGGACGCTGGTATCCTTGTAGCGtatgcaataaaaaatttacaggTTACCGTCTTAAAGAACATATGAGAACCCACACTAAGGAAAAGCCAATTTCGTGTGACATTTGTGGTGTAAAGTTCAGCCTTGATTGTAATTTGCGACGACATATGAAGATTCACACCGGGGAACGTCCTCATAAGTGTCACGTTTGCGCTAAAGAATTCATTCGAGCGACAGCGCTTGTTTTACATTTGAGAACACATACCGGAGAGAAGCCATTTGTTTGCAGTACTTGCGGAAAGAAATACAGTCAATCATATCCGTTTAAATGTCATCTAAGAAAGCATGAACCGACCAATGGTGAAAACTACGAGTTGCCTACttgcaaaatatgtaataaaacgtTTACGACTAATGTAATTATGAAAGCCCATGTTATGCAAGTTCACGAACCGAGAAAGTTTTTATGCAATCTTTGCGGAAAAGATTTTGCAACAAAGAAGGCGTTGCTTGTTCATATGAACATACACACTGGTGAAAAACCTTTTTCTTGCAAAACTTGTGGGAAATCGTTTAGACAAACATCTGGTTTAAAAGCTCATGAAGTAATTCATACGGGAGAAAGACCTTATGTGTGTGAGATATGCGATAAGCCTTTTACGCAGATTAATCATTTGAAGTATCATGCTCGTGTACATACTGGGGAGAAGCCCTACACCTGTtctgtttgtaataagagtttttcACTCAACGGAACTTTGACGGTACATATGAGAACACATACGGGGGAGACTCCGTATTTATGTCCGGTTTGTGGAAAAGGATTTTACGATTCTAGTAGTATGAAAAGACATTACGATATTTGCCGTGCTTGTTTGTCTGAAGGAGAATTACAACCGATTTTTATGACTAGAATAGGAGATAATAGTTTAACTTTATCGGAAATGCTAATGGCGTGTGCTTCAGTTCAGGCATCTGAAGGAGACGGTTTACCCAGTAAAATGTGTTCCTCCTGCATTACACAAATGAATCACGCATTTTCTTTCAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACCTTTTCAATCGAATATCTAGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTCTACCTTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACATTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGGAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACCTTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACTTGGAAGAAAGAAATGATGTTGATGATGAAAATATAGTCGAATATGACAAACcttcaaatttaaatgaaatgagcctaaatgaaaatatttcagataatcAGGAAAACGACGCCGTTGTCCAGATAACGAAActtaaaaaagacgaaaaaaaaCAACGTAGAACGAATGGTGTGACAAAAAATAACAACGAATGTCAAAATTGTAATCTTCAGTTTGAAACGCGAGCTGAATATTTGGATCAcgtaaaaaacataaaacatcAAAGACGATTGTATCCTTGTAGcatgtgcaataaaaaatttccAGGTTACCGCCTCAAAGAACATATGAGAACCCACACTAAGGAAAAGCCGTTTTCATGCGAAGTTTGTGGTTTCAAGTTCAGCCTTGATTGTAATTTGCGACGACATATGAAGGTTCACACCGGGGAACGTCCTCATAAGTGTAATGTTTGCGGTAAAGGATTCATTCAATCTACATCGCTTACCGAACATCTGAGAATGCATACAGGGGAGATGCCATATATTTGTAACACTTGCGGAAAGAAATTCAGACATTCGAGGCAGTTTCATTTTCACGTAAGGAAGCATGATTTAAAAGATGGTGAAAATAAACCTGTTAAACACGATGAAAACGACCAGTTACGTACttgcaaaatatgtaataaattgtTCTCATCAAACGAAGTTATGAAAACCCATATGCTAATACATGGACCGAAAAGGTTTTTATGTAGTGATTGCGGTAAAGATTTTTCAACAAAGCAGGGGTTGCAGTCTCATATGAAAGTACATACAGGTGAAAAACCCTATCCGTGCCAAACTTGCGGGAAATCGTTTTCTCAAGTGGGTCTTTTGAAAGCACACCAATTAATTCATACGGGAGAAAAACCTTATATTTGTGGGGTATGTGATAAGTCTTTTACGCAGAGAAACCATTTGAAGTATCATGTTCGTATACATAGTGGGGAGAAGCCCTACACCTGTtctgtttgtaataagagtttttcACTCAACGGAACTTTGACGGTACATATGAGAATACATACGGGGGAGACTCCGTATTTATGTCCGGTTTGTGGAAAAGGATTTTATGATTCTAGCAGtatgaaaaaacatttgaagAAACATAACATTGAGGACAATCTTAAAGTAGAATGTAAAAAGAATAGTAAAATATAG
Protein Sequence: MDETNIIQIINADDVCRACLSEGELQPIFMTRLEESHLTLSEMLMACTSVKASEEDGLPSKMCFSCIEQMKQAFSFKRQCEETDANLRLYLTNRISTKWGNSLTDRAKKEIMDEHHSDELNDVDNENTVEYDIFSNLNEMSSNENNSDNQQKDSIVQIARRKKDKKTRRSRTAGVRKNNNECEKCNLQFDTRSEYLLHARSKRHQGRWYPCSVCNKKFTGYRLKEHMRTHTKEKPISCDICGVKFSLDCNLRRHMKIHTGERPHKCHVCAKEFIRATALVLHLRTHTGEKPFVCSTCGKKYSQSYPFKCHLRKHEPTNGENYELPTCKICNKTFTTNVIMKAHVMQVHEPRKFLCNLCGKDFATKKALLVHMNIHTGEKPFSCKTCGKSFRQTSGLKAHEVIHTGERPYVCEICDKPFTQINHLKYHARVHTGEKPYTCSVCNKSFSLNGTLTVHMRTHTGETPYLCPVCGKGFYDSSSMKRHYDICRACLSEGELQPIFMTRIGDNSLTLSEMLMACASVQASEGDGLPSKMCSSCITQMNHAFSFKRHCEESDANLRLYLFNRISRISREQVKLDTDDIKEEIKLKDLHLEEKNDVDDENIVEYDKRHCEESDANLRFYLFNRISREQVKLDTDDIKEEIKLKDLHLEEKNDVDDENIVEYDKRHCEESDANLRLYIFNRISREQVKLDTDDIKEEIKLEDLHLEEKNDVDDENIVEYDKRHCEESDANLRLYLFNRISREQVKLDTDDIKEEIKLKDLHLEERNDVDDENIVEYDKPSNLNEMSLNENISDNQENDAVVQITKLKKDEKKQRRTNGVTKNNNECQNCNLQFETRAEYLDHVKNIKHQRRLYPCSMCNKKFPGYRLKEHMRTHTKEKPFSCEVCGFKFSLDCNLRRHMKVHTGERPHKCNVCGKGFIQSTSLTEHLRMHTGEMPYICNTCGKKFRHSRQFHFHVRKHDLKDGENKPVKHDENDQLRTCKICNKLFSSNEVMKTHMLIHGPKRFLCSDCGKDFSTKQGLQSHMKVHTGEKPYPCQTCGKSFSQVGLLKAHQLIHTGEKPYICGVCDKSFTQRNHLKYHVRIHSGEKPYTCSVCNKSFSLNGTLTVHMRIHTGETPYLCPVCGKGFYDSSSMKKHLKKHNIEDNLKVECKKNSKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511019;
90% Identity: iTF_01511019;
80% Identity: iTF_01511019;