Vnig007180.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venustoraphidia nigricollis
Gene Symbol
-
Assembly
GCA_034508555.1
Location
JAVRKA010000015.1:5023713-5028013[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.094 2.6 9.2 0.9 2 23 181 204 181 204 0.90
2 22 0.0014 0.038 15.0 1.5 1 23 209 230 209 230 0.98
3 22 0.00042 0.011 16.6 1.2 2 23 237 258 236 258 0.97
4 22 0.00028 0.0076 17.2 1.7 1 23 264 286 264 286 0.98
5 22 0.043 1.2 10.3 5.1 1 23 292 314 292 314 0.98
6 22 0.012 0.32 12.1 0.5 2 23 326 348 326 348 0.90
7 22 3.1e-05 0.00084 20.2 0.2 1 23 353 375 353 375 0.95
8 22 2.1e-05 0.00059 20.7 0.6 1 23 381 403 381 403 0.94
9 22 2e-05 0.00055 20.8 0.8 1 23 409 431 409 431 0.98
10 22 7.6e-07 2.1e-05 25.3 1.0 1 23 437 459 437 459 0.99
11 22 0.00022 0.006 17.5 0.1 1 20 465 484 465 486 0.93
12 22 0.64 18 6.6 0.4 2 22 826 846 826 849 0.89
13 22 0.011 0.29 12.2 1.2 1 23 854 875 854 875 0.98
14 22 0.00039 0.011 16.7 2.8 1 23 881 903 881 903 0.98
15 22 3.3e-06 9.2e-05 23.2 1.4 1 23 909 931 909 931 0.98
16 22 0.11 3 9.0 8.1 1 23 937 959 937 959 0.97
17 22 0.0024 0.066 14.3 0.9 2 23 979 1000 979 1000 0.97
18 22 3.3e-06 9.1e-05 23.3 0.7 1 23 1005 1027 1005 1027 0.95
19 22 6.7e-06 0.00018 22.3 0.1 1 23 1033 1055 1033 1055 0.98
20 22 6.7e-06 0.00018 22.3 2.1 1 23 1061 1083 1061 1083 0.98
21 22 1.5e-06 4.2e-05 24.3 0.6 1 23 1089 1111 1089 1111 0.99
22 22 6.8e-06 0.00019 22.3 0.8 1 23 1117 1139 1117 1139 0.96

Sequence Information

Coding Sequence
ATGGATGAAACtaatataatacaaattattaatgcTGACGATGTTTGCCGTGCTTGTTTGTCTGAAGGAGAATTACAACCTATTTTTATGACTAGACTAGAAGAGAGTCATTTAACATTATCAGAAATGTTAATGGCGTGTACTTCAgttaagGCATCTGAAGAAGACGGTTTACCCAGTAAAATGTGTTTCTCATGCATTGAACAAATGAAACAAGCATTTTCTTTCAAAAGACAATGTGAAGAAACAGATGCAAATCTCCGTTTGTATCTTACCAATCGAATATCTACAAAATGGGGAAATTCGCTCACCGACCGTGCAAAGAAAGAAATAATGGATGAGCATCACTCAGATGAATTAAACGATGTTGATAATGAAAATACAGTCGAATAtgacatattttcaaatttaaatgaaatgagttcaaatgaaaataattcagATAATCAACAAAAGGATTCCATTGTTCAAATAGCAAGACGTAAAAAGGACAAAAAAACACGACGCTCCAGAACAGCGGGTGTGcgaaaaaataacaatgaatgtGAAAAATGTAATCTGCAGTTTGATACACGATCTGAATATTTACTTCACGCAAGAAGCAAAAGACATCAGGGACGCTGGTATCCTTGTAGCGtatgcaataaaaaatttacaggTTACCGTCTTAAAGAACATATGAGAACCCACACTAAGGAAAAGCCAATTTCGTGTGACATTTGTGGTGTAAAGTTCAGCCTTGATTGTAATTTGCGACGACATATGAAGATTCACACCGGGGAACGTCCTCATAAGTGTCACGTTTGCGCTAAAGAATTCATTCGAGCGACAGCGCTTGTTTTACATTTGAGAACACATACCGGAGAGAAGCCATTTGTTTGCAGTACTTGCGGAAAGAAATACAGTCAATCATATCCGTTTAAATGTCATCTAAGAAAGCATGAACCGACCAATGGTGAAAACTACGAGTTGCCTACttgcaaaatatgtaataaaacgtTTACGACTAATGTAATTATGAAAGCCCATGTTATGCAAGTTCACGAACCGAGAAAGTTTTTATGCAATCTTTGCGGAAAAGATTTTGCAACAAAGAAGGCGTTGCTTGTTCATATGAACATACACACTGGTGAAAAACCTTTTTCTTGCAAAACTTGTGGGAAATCGTTTAGACAAACATCTGGTTTAAAAGCTCATGAAGTAATTCATACGGGAGAAAGACCTTATGTGTGTGAGATATGCGATAAGCCTTTTACGCAGATTAATCATTTGAAGTATCATGCTCGTGTACATACTGGGGAGAAGCCCTACACCTGTtctgtttgtaataagagtttttcACTCAACGGAACTTTGACGGTACATATGAGAACACATACGGGGGAGACTCCGTATTTATGTCCGGTTTGTGGAAAAGGATTTTACGATTCTAGTAGTATGAAAAGACATTACGATATTTGCCGTGCTTGTTTGTCTGAAGGAGAATTACAACCGATTTTTATGACTAGAATAGGAGATAATAGTTTAACTTTATCGGAAATGCTAATGGCGTGTGCTTCAGTTCAGGCATCTGAAGGAGACGGTTTACCCAGTAAAATGTGTTCCTCCTGCATTACACAAATGAATCACGCATTTTCTTTCAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACCTTTTCAATCGAATATCTAGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTCTACCTTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACATTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGGAGGACCTGCACttggaagaaaaaaatgatgttgATGATGAAAATATAGTCGAATATGACAAAAGACATTGTGAAGAATCTGATGCAAACCTTCGTTTGTACCTTTTCAATCGAATATCTAGAGAACAGGTAAAATTGGACACTGATGATATAAAGGAAGAAATCAAGTTGAAGGACCTGCACTTGGAAGAAAGAAATGATGTTGATGATGAAAATATAGTCGAATATGACAAACcttcaaatttaaatgaaatgagcctaaatgaaaatatttcagataatcAGGAAAACGACGCCGTTGTCCAGATAACGAAActtaaaaaagacgaaaaaaaaCAACGTAGAACGAATGGTGTGACAAAAAATAACAACGAATGTCAAAATTGTAATCTTCAGTTTGAAACGCGAGCTGAATATTTGGATCAcgtaaaaaacataaaacatcAAAGACGATTGTATCCTTGTAGcatgtgcaataaaaaatttccAGGTTACCGCCTCAAAGAACATATGAGAACCCACACTAAGGAAAAGCCGTTTTCATGCGAAGTTTGTGGTTTCAAGTTCAGCCTTGATTGTAATTTGCGACGACATATGAAGGTTCACACCGGGGAACGTCCTCATAAGTGTAATGTTTGCGGTAAAGGATTCATTCAATCTACATCGCTTACCGAACATCTGAGAATGCATACAGGGGAGATGCCATATATTTGTAACACTTGCGGAAAGAAATTCAGACATTCGAGGCAGTTTCATTTTCACGTAAGGAAGCATGATTTAAAAGATGGTGAAAATAAACCTGTTAAACACGATGAAAACGACCAGTTACGTACttgcaaaatatgtaataaattgtTCTCATCAAACGAAGTTATGAAAACCCATATGCTAATACATGGACCGAAAAGGTTTTTATGTAGTGATTGCGGTAAAGATTTTTCAACAAAGCAGGGGTTGCAGTCTCATATGAAAGTACATACAGGTGAAAAACCCTATCCGTGCCAAACTTGCGGGAAATCGTTTTCTCAAGTGGGTCTTTTGAAAGCACACCAATTAATTCATACGGGAGAAAAACCTTATATTTGTGGGGTATGTGATAAGTCTTTTACGCAGAGAAACCATTTGAAGTATCATGTTCGTATACATAGTGGGGAGAAGCCCTACACCTGTtctgtttgtaataagagtttttcACTCAACGGAACTTTGACGGTACATATGAGAATACATACGGGGGAGACTCCGTATTTATGTCCGGTTTGTGGAAAAGGATTTTATGATTCTAGCAGtatgaaaaaacatttgaagAAACATAACATTGAGGACAATCTTAAAGTAGAATGTAAAAAGAATAGTAAAATATAG
Protein Sequence
MDETNIIQIINADDVCRACLSEGELQPIFMTRLEESHLTLSEMLMACTSVKASEEDGLPSKMCFSCIEQMKQAFSFKRQCEETDANLRLYLTNRISTKWGNSLTDRAKKEIMDEHHSDELNDVDNENTVEYDIFSNLNEMSSNENNSDNQQKDSIVQIARRKKDKKTRRSRTAGVRKNNNECEKCNLQFDTRSEYLLHARSKRHQGRWYPCSVCNKKFTGYRLKEHMRTHTKEKPISCDICGVKFSLDCNLRRHMKIHTGERPHKCHVCAKEFIRATALVLHLRTHTGEKPFVCSTCGKKYSQSYPFKCHLRKHEPTNGENYELPTCKICNKTFTTNVIMKAHVMQVHEPRKFLCNLCGKDFATKKALLVHMNIHTGEKPFSCKTCGKSFRQTSGLKAHEVIHTGERPYVCEICDKPFTQINHLKYHARVHTGEKPYTCSVCNKSFSLNGTLTVHMRTHTGETPYLCPVCGKGFYDSSSMKRHYDICRACLSEGELQPIFMTRIGDNSLTLSEMLMACASVQASEGDGLPSKMCSSCITQMNHAFSFKRHCEESDANLRLYLFNRISRISREQVKLDTDDIKEEIKLKDLHLEEKNDVDDENIVEYDKRHCEESDANLRFYLFNRISREQVKLDTDDIKEEIKLKDLHLEEKNDVDDENIVEYDKRHCEESDANLRLYIFNRISREQVKLDTDDIKEEIKLEDLHLEEKNDVDDENIVEYDKRHCEESDANLRLYLFNRISREQVKLDTDDIKEEIKLKDLHLEERNDVDDENIVEYDKPSNLNEMSLNENISDNQENDAVVQITKLKKDEKKQRRTNGVTKNNNECQNCNLQFETRAEYLDHVKNIKHQRRLYPCSMCNKKFPGYRLKEHMRTHTKEKPFSCEVCGFKFSLDCNLRRHMKVHTGERPHKCNVCGKGFIQSTSLTEHLRMHTGEMPYICNTCGKKFRHSRQFHFHVRKHDLKDGENKPVKHDENDQLRTCKICNKLFSSNEVMKTHMLIHGPKRFLCSDCGKDFSTKQGLQSHMKVHTGEKPYPCQTCGKSFSQVGLLKAHQLIHTGEKPYICGVCDKSFTQRNHLKYHVRIHSGEKPYTCSVCNKSFSLNGTLTVHMRIHTGETPYLCPVCGKGFYDSSSMKKHLKKHNIEDNLKVECKKNSKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01511873;
90% Identity
iTF_01511873;
80% Identity
iTF_01511873;