Vcam009329.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Venusia cambrica
Gene Symbol
-
Assembly
GCA_951394065.1
Location
OX596043.1:8597319-8624965[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.4e-05 0.0073 17.4 1.5 1 23 405 427 405 427 0.96
2 20 0.0006 0.046 14.8 0.8 1 20 433 452 433 455 0.94
3 20 0.00072 0.056 14.6 5.8 1 23 474 496 474 496 0.98
4 20 2.1e-05 0.0016 19.4 3.9 1 23 502 524 502 524 0.99
5 20 4.1e-05 0.0031 18.5 5.3 1 23 530 552 530 552 0.97
6 20 6.5e-07 5e-05 24.2 6.1 1 23 558 580 558 580 0.98
7 20 2.1e-07 1.6e-05 25.7 2.6 1 23 586 608 586 608 0.98
8 20 0.00011 0.0086 17.1 6.7 1 23 614 636 614 636 0.97
9 20 2.1e-05 0.0017 19.4 6.4 1 23 642 664 642 664 0.98
10 20 5.3e-07 4.1e-05 24.4 1.9 1 23 670 692 670 692 0.98
11 20 5.4e-05 0.0042 18.1 7.9 1 23 698 720 698 720 0.98
12 20 0.00014 0.011 16.8 6.8 1 23 726 748 726 748 0.97
13 20 2.1e-05 0.0016 19.4 7.0 1 23 754 776 754 776 0.98
14 20 6.6e-06 0.00051 21.0 5.7 1 23 782 804 782 804 0.96
15 20 1.1e-05 0.00084 20.3 5.3 1 23 810 832 810 832 0.97
16 20 2.6e-06 0.0002 22.3 3.8 2 23 839 860 838 860 0.98
17 20 4.4e-05 0.0034 18.4 10.2 1 23 866 888 866 888 0.97
18 20 4e-05 0.0031 18.5 6.5 1 23 894 916 894 916 0.97
19 20 0.00037 0.028 15.5 0.3 1 23 923 945 923 945 0.97
20 20 0.034 2.6 9.3 6.0 1 23 955 977 955 977 0.99

Sequence Information

Coding Sequence
ATGAATCCGGATCACCACAATATAAACACGGGTGGCGGCCAGCCTCCTGGGAGTTCTGAGTCTCAGAATCAGAGAGTGCAAGCTCAACAGCAGCAGCAAATTAGTTTACCTGCGTCCACAGCCGCCACTGACCTGCGAGTAAATTCGGCAGCTGTAAACGTTGCATTGTCCAGCGTTGCGAAGTACTGGGTGTTTACAAATTTATTCCCAGGACCCATTCCTCAAGTGTCTGTGTATGGATTACCTACTGGGACGAGAATTGAAAATGGAAAAGCAGTGCAGGATATTGGTCATGCAAGCATACTCAATGGGGATCCAAACATCATTCTGGGTCATCATGGTGGGCAACCTCAAGTTACTGTGTCAGCTGCCCAACAAATACCTGTCTCGCAGATCATTGCCACACAGTCTGGCCAGCATGAAGCGTTGGTGGCACACAGTCAACAGGAGGTCCAGCAGGTGTCCAGTCAGCTCACAGCATCGCATCACCAGGTACCCAATAACCGGGTCGAATTTGTCCAACACCATAACATTGATATGGGCCACCATACTCAACAGCGGCATGTAATGCAGCAGCAGTTAATGACCCAACCTGAACACTCCAACCAGCAGATACAACTGACCGTAAGCGAAGACGGCATCGTGACAGTGGTGGAGCCGGGCAGCAGCAAGATGGCGGAAAAGGAGGAACTCCATGAGGCCATTAAACTGCCCGGTGACCACACGCTAACCGTGCATCAGCTGCAGCAAATCGTCGGACAGCAAGTGCTAGATAGCGTGGTTCGCATAGAGCAAGCGACCGGCGAACCCGCTAACATTCTGGTGACCCACAACCCGGACGGCACCACCTCCATCGAAGCCAGTGCGGGTGACCCGCTAGCGATCGTCAAAGACGAGAAGAGCGGAGGGAAAATTGAGAACGCGCAGTTCGCTTTACCCACAGAAATCAAGGAGATGAAGGGCATCGATCTGAAGGCTGTAAATATGAACATGGACGGAGCAGTGGTGAAGATATCGACGGGTGCGACGGATCACGACATCCACGCGATGTACAAAGTCAACGTTGAGGACCTCTCTCAGCTGTTAGCGTACCACGAGGTCTTCGGCAAGATGGGGCCCGATGGACAGCCTCAGGCTAAAGTTGCGGATTTAGAAATAGAAGTACCAGGAACAAGCTCGGGCATGTCGGAAGCGGAGTCGTCGCCGGGACACCACGCCTGTGATATCTGCGGGAAGATATTCCAGTTCCGGTATCAACTTATAGTTCACAGacGTTACCACGGCGAGACAAAACCTTACACGTGCCAAGTTTGCGGCTTATCTTTCCCGAATCCCGTCGAACTATCTAAGCACGGGAAGTGCCATCTTGCCGGTGATCCCGCTGAAAGGCATGCCAAGAGAGTAGCCCAAGACAAACCTTATGCTTGCACCACTTGCCATAAAACTTTCTTGCGTAAGGAACATCTCAACAATCATGTTCGCAGTCATACAGGAGAAACGCCTTACAGATGCGAGTACTGCGCGAAAACGTTCACCCGCAAAGAGCACATGGTGAACCACGTGCGGAAGCACACGGGAGAAACGCCGCACCGCTGTGACATCTGCAAGAAGAGCTTCACGAGGAAGGAGCATTTCATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCAATGTACCGTTTGCGGGAAGAAATATACTCGCAAGGAGCATTTGACGAATCATATGAGGTCGCATACAAACGACACTCCGTTCCGTTGCGATATCTGCGGGAAATCTTTCACCAGAAAGGAACACTACACCAATCACATTATGTGGCACTCTGGCGAAACGCCCCACCGATGCGACTTTTGTTCCAAAACGTTTACCCGCAAGGAGCACCTACTGAACCATGTGAGACAACACACGGGCGAGTCTCCCCACCGGTGCAACTACTGCTCCAAGTCGTTCACTCGCCGCGAGCATCTCGTCAACCACGTGCGGCAACACACGGGCGAGACGCCCTTCCAGTGCGGGTACTGTCCCAAAGCATTCACGAGGAAAGACCATCTCGTGAACCACGTGCGGCAGCATACAGGCGAGTCCCCCCACAAGTGTTCGTTCTGCACCAAGTCGTTCACCCGGAAAGAACACCTCACCAACCACGTGCGACAGCACACCGGTGAATCGCCCCATCGCTGCACCTTCTGCGCTAAATCCTTCACCAGGAAAGAACACCTCACCAACCATGTTAGACAGCATACGGGTGAGACTCCGCACAAGTGCACGTACTGCACGCGCGCGTTCTCGCGCAAGGAGCATCTCAACACGCACCTTCGTCAGCACACGGGCCAAACGCCGCACGCCTGCTCCTACTGCAACAAAACCTTCACCAGGAAGGAGCATCTCGTCAACCATGTGCGGAAACACACCGGTGAAACCCCGTTCAAGTGCACGTTCTGTTCGAAGTCGTTCTCTCGCAAGGAGCACCTCACCAACCACATTACTCTGCATACCGGAGAGACCCCTAACAAATGTCCCTTCTGTACCAAGACGTTCTCAAGGAAGGAACACCTCACGAATCATGTCAGAATCCACACGGGCGAATCGCCGCACCGATGCGAGTTCTGCCACAAGACATTCACCCGCAAGGAGCACCTCACGAATCACATGAAGCAGCACACCGGGGACGCTGCGCACACCTGCAAGCTTTGTCAGAAACCATTCACCAGGAAGGAGCATTTATTGACTCATATGAAGTATCACAGTTGTGGCGAGCGACCGTACAGTTGTGGCGAGTGCGGGAAGTCTTTCCCGCTGAAAGGCAACCTTATGTTCCACGAACGATCGCACAACAAGGCTGGCGGTGGCCCAAGACCTTTCCGGTGCGATATCTGCTCTAAGGACTTTATGTGCAAAGgACATTTACTAACGCACCGGCGGACGCACGCAGATGCCAGTAACGAAGCGGCCGTCGAAGCGCAGACCGATACAGATGAAGTTTTGACGGTCACCACCGACTGCACCAACAAATGCATCAAGGTGGAACTTGAATCTGTTGAAAGAACCGAGACTAGACCTTCAGTAGAAAATGGGACAACGGAAAACGCTGTCGTCGGTCAACCCGTAATCAGTGATTCTCCAAATCATATGGTTACTCCAACGCAAAGCAATGTGATGCATATAAGTCATGTCCGCGTCCCCACATCGAGCCCAAGCTCCGGTGTGACCGCGACGTTCACTCACGCGGTGGGCACGCAACAACACCCCAGCGCGTCCATCGCGCACCATCCCGTCACCGTCAACTACTAG
Protein Sequence
MNPDHHNINTGGGQPPGSSESQNQRVQAQQQQQISLPASTAATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDIGHASILNGDPNIILGHHGGQPQVTVSAAQQIPVSQIIATQSGQHEALVAHSQQEVQQVSSQLTASHHQVPNNRVEFVQHHNIDMGHHTQQRHVMQQQLMTQPEHSNQQIQLTVSEDGIVTVVEPGSSKMAEKEELHEAIKLPGDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDPLAIVKDEKSGGKIENAQFALPTEIKEMKGIDLKAVNMNMDGAVVKISTGATDHDIHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQAKVADLEIEVPGTSSGMSEAESSPGHHACDICGKIFQFRYQLIVHRRYHGETKPYTCQVCGLSFPNPVELSKHGKCHLAGDPAERHAKRVAQDKPYACTTCHKTFLRKEHLNNHVRSHTGETPYRCEYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCTVCGKKYTRKEHLTNHMRSHTNDTPFRCDICGKSFTRKEHYTNHIMWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCTRAFSRKEHLNTHLRQHTGQTPHACSYCNKTFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTNHITLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHMKQHTGDAAHTCKLCQKPFTRKEHLLTHMKYHSCGERPYSCGECGKSFPLKGNLMFHERSHNKAGGGPRPFRCDICSKDFMCKGHLLTHRRTHADASNEAAVEAQTDTDEVLTVTTDCTNKCIKVELESVERTETRPSVENGTTENAVVGQPVISDSPNHMVTPTQSNVMHISHVRVPTSSPSSGVTATFTHAVGTQQHPSASIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00704247;
90% Identity
iTF_00701278;
80% Identity
-