Vcan003325.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:59440-64059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.12 14 6.7 0.3 3 19 117 132 115 135 0.88 2 14 0.0098 1.1 10.1 4.9 2 20 142 160 141 163 0.94 3 14 0.0021 0.24 12.2 4.0 1 23 169 192 169 192 0.93 4 14 3.1e-05 0.0036 17.9 3.2 1 23 198 220 198 220 0.98 5 14 4.6e-05 0.0053 17.4 0.2 1 23 356 378 356 378 0.98 6 14 0.00032 0.037 14.8 1.1 2 21 388 407 387 408 0.93 7 14 0.00022 0.025 15.3 2.7 1 20 430 449 430 452 0.92 8 14 0.01 1.2 10.0 0.4 1 23 457 480 457 480 0.94 9 14 1e-06 0.00012 22.6 0.3 1 23 486 508 486 508 0.98 10 14 0.0017 0.2 12.5 6.3 1 23 515 537 515 537 0.98 11 14 0.00029 0.034 14.9 0.4 3 23 545 565 543 565 0.97 12 14 0.00034 0.039 14.7 0.2 1 23 571 594 571 594 0.96 13 14 1.3 1.5e+02 3.4 0.5 1 23 608 630 608 630 0.89 14 14 0.088 10 7.1 0.0 2 23 864 885 863 885 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCACGAGAATGACTATGTTTCATTTCCAATACACGATGAGATCCAAGAGAGCGTAGTGTCCCATGAGGAAGTATGCGAGCCATCGGAAGATTGCATACTGCCAGACAATTTGTCAGGAGTGGCAGTAGAAGAGGTAAATTCAGTAATAACAGAGGGGCAGGTAGCTGTTGAAATATTAATGGAACATTCGGATGAAGAGGAGGAAAAATCGATATATCCGATTTATATAAAACAGGAGGAGCAACATCAATATACATCTGGAGATGACGAATCAATGGCTGTAGAGGCATTGCGCCAATTGGGTGGCATGTATCCTTGCTTTGAGGACAAAAAGATAAATTGTCCTAAGTGTTCGAGACAATTCAATCAAGCGGAATTTCAAAGTCACAGCGAAAGTTGTACTTCTGGAAAATTGTGTTGCTCAACTTGTAACGAGCGTTTTGAAAGGAAGCAAGATTTGAACAATCACATGGTTTGCCATCAAGTAGACAGGCCGCACGCATGTCGCACTTGCGGCAGTTTATTTCGTTCGAAATCTCATCTCCAGACTCACATGACGCAAGTACACAAAGCAGAAAAACCACACAAGTGTACCATTTGTGGCTCTGATTTTCATCGTCCTTCGAGTCTCTCGAATCACATGAAAATTCACACTTACGTCGCTGGGAGGGCTCTGGTACAAACAGAAACCAGCAGCCAATCCGAAAATGAGACAAGCCGAAAATGGGGTGAAGACAATCGGAACACCGGGACTCCGGGTGGATACGAGGTACATTGGTCGGTGCCATATAATTTTGATCCTGGAGTTGAGAGCATTTCTGGAAACCCTGAAAAAATGGATACTCTTCAGGAGTTCACGGTGATGCCTAACGGCGAAGTAACTCATTTTGAGTATACCAGCCAAGAGTCTATCACACCTCCTGTCAATCGGTATAACCTTGCTATAAACAACTTTACCAACTCGGAGTCCTGCGTGAAAATAGAGAACCTTCCGTTTGCTACGATCGATTCCAAGACTTATCCAGAGTATGAAACAAGTGACGGCGGCGTAAAGAGCTATTCTTGTACCCAATGCGGAGCAAACTTTTCGAAGCCTACCGCTTTAGCTTCTCACGCAAAAACCCACATGGTGAAAACTTGGTCAATGCCCATTGAATGCCAATACTGCGACAAACAGTTTCAAGACTCCACTCATTTGTCCAGTCACCAAACAACCTGTGCTAAAAAATTGATGCAAGCAAACTTGGAGAACGGGGTGACCAACGGAAAATGGGGCAAACACGCTTGCACTGAATGTGGCAAAAAGTTTACCACCAAACAAAAAATGTTTCGTCACCAATGGATTCATCGAAAAAAAACTCACGCTTGTGAGATTTGTGGATCTCAATTCGAGAAACAAAATCAGTTAGACGAGCATCGATTGTCTGCTCACCCAGGGGATTCGCCCTTCACCTGTACCGAGTGCGGCAAGAGTTTTGTCTCGAGACAGGGACTCTGGGAACATGGACGAACCCACGCCGGAAGCCCAGCGCATTTTCACTGTGACACTTGCTCCAAAACTTTTTCATCGAGGCAAGGCTATCTTATTCACCATCGTACTCACACAGGAGAGCGACCGTACGGCTGTAAATTTTGTTGGAAGGCTTTCCGCGATGGTGGCACACTGAGGAAGCACGAACGTATACACACCGGCGAACGGCCTCACGTTTGTCCTTTGTGTTCCCGAGCATTCAATCAGAAAGTTGTTTTACGAGAGCACGTTAGATGGGTGCATGCGGCTGGCAAAAACGAAACGGAGGTCAGCGGGCCACCTTACCCTTGTCCATTGTGTGGCTCTCTCAACCAAGATCGTGATGAGCTGTGTGCCCACATCGTCAAACATTCGGACCAAATGATCGCTGAGGCTAAAGCAAAAACTAACAACAACGCGACAAAAACAAAAGCGGCGAAGAAGAGAACGAAACCGATGACTACTGACAAATCAGCAAAAGCCGGACACGTCGAAAGGTCTATTTCTAGGAACGAAGAAGAGGCCGAAGCTCTTCTCTCCATCCCGACTGACAGTGCAGAAGACGAGGTAGCCCCAATGATTCTCAAGGACCAGGAAATCGAGGAACAACTTCTCCTCGTCACAGGGGACAAAAACCTCGTAAGTATCTCCTCCAAACAGGAGAAGCGAAACGATCAGCCCCTTCTCGTACCTGGACAGACCGCCATCATCACGAAAATACGTCAAACGGACGTTCTTCAACTCATACAAAATGCCAAACGGAACGAAACTCTTCGCCTTATTTCCTCTGGCAAACCAAACAACACGCTTCATCTCATCACCAAACAAAATCAATCACTGCCCGTCCTTGCTATCAGAAATCCTCAGAGTCACGATAACTTCTCTAGCCAAATGCCCGATCCAGTTGATCCACGAATCGCCATCGATAACGAACACATCCCCGATAATAATCTACAAGAAGGATGCCTCATGGACGACGAAACTTCTCATGTCAGCGCTGAACAAGTTGCACAATTGTTTCACCAACATGAACGACAGGAAAGTGATAACGACGACGGTGACGAGGAAATGGTTTGTGGCATATGCGGCGATGATTTCGATGATAAAAATGTTCTCATGGAACACGTCAAAATTCACATTTAA
- Protein Sequence
- MEAHENDYVSFPIHDEIQESVVSHEEVCEPSEDCILPDNLSGVAVEEVNSVITEGQVAVEILMEHSDEEEEKSIYPIYIKQEEQHQYTSGDDESMAVEALRQLGGMYPCFEDKKINCPKCSRQFNQAEFQSHSESCTSGKLCCSTCNERFERKQDLNNHMVCHQVDRPHACRTCGSLFRSKSHLQTHMTQVHKAEKPHKCTICGSDFHRPSSLSNHMKIHTYVAGRALVQTETSSQSENETSRKWGEDNRNTGTPGGYEVHWSVPYNFDPGVESISGNPEKMDTLQEFTVMPNGEVTHFEYTSQESITPPVNRYNLAINNFTNSESCVKIENLPFATIDSKTYPEYETSDGGVKSYSCTQCGANFSKPTALASHAKTHMVKTWSMPIECQYCDKQFQDSTHLSSHQTTCAKKLMQANLENGVTNGKWGKHACTECGKKFTTKQKMFRHQWIHRKKTHACEICGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKTNNNATKTKAAKKRTKPMTTDKSAKAGHVERSISRNEEEAEALLSIPTDSAEDEVAPMILKDQEIEEQLLLVTGDKNLVSISSKQEKRNDQPLLVPGQTAIITKIRQTDVLQLIQNAKRNETLRLISSGKPNNTLHLITKQNQSLPVLAIRNPQSHDNFSSQMPDPVDPRIAIDNEHIPDNNLQEGCLMDDETSHVSAEQVAQLFHQHERQESDNDDGDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01299500; iTF_00265940; iTF_00266668; iTF_00829731; iTF_00439691; iTF_00828973; iTF_00263727; iTF_00262843;
- 90% Identity
- iTF_00265940;
- 80% Identity
- -