Rmeg012063.1
Basic Information
- Insect
- Rhimphoctona megacephalus
- Gene Symbol
- -
- Assembly
- GCA_963989365.1
- Location
- OZ022416.1:30277883-30280534[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0047 0.67 11.3 4.1 2 20 142 160 141 163 0.94 2 13 0.0016 0.23 12.8 4.1 1 23 169 192 169 192 0.93 3 13 3.6e-05 0.0052 17.9 3.2 1 23 198 220 198 220 0.98 4 13 4.1e-05 0.0059 17.8 0.0 1 23 354 376 354 376 0.98 5 13 0.00037 0.053 14.8 1.1 2 21 386 405 385 406 0.93 6 13 0.00026 0.037 15.3 2.7 1 20 428 447 428 450 0.92 7 13 0.005 0.72 11.2 0.7 1 23 455 478 455 478 0.96 8 13 1.2e-06 0.00017 22.6 0.3 1 23 484 506 484 506 0.98 9 13 0.002 0.28 12.5 6.3 1 23 513 535 513 535 0.98 10 13 0.00034 0.048 14.9 0.4 3 23 543 563 541 563 0.97 11 13 0.00039 0.055 14.7 0.2 1 23 569 592 569 592 0.96 12 13 1.5 2.1e+02 3.4 0.5 1 23 606 628 606 628 0.89 13 13 0.1 15 7.1 0.0 2 23 861 882 860 882 0.96
Sequence Information
- Coding Sequence
- ATGGAACCTCACGAGAACGAGTATGTATCGTTTCCGATACACGATACAATCCAAGAAAGCATAGTGTCCCACGAGGAGGTATGCGAGCCGTCGGAGGATTGCATATTGACGGAGAGTTTGTCAGGAGTTGTAGTAGAAGAGGTAAATTCAGTGATATCGGAGGGGCAGGTGGCGGTTGAAATATTGACGGAGCATTCGGACGAGGAGGAGGAAAAATCGATGTATCCAATTTATATAAAGCAGGAGGAGCAACATCAATATACATCAGGGGATGACGAGTCAATGGCTGTGGAGGCGCTTCGTCAATTGGGTGGAATGTATCCATGCTTTGAGGACAAAAAGATAAGCTGTCCCAAGTGTTTGGGACAATTTAATCAAGTGGAATTTCAGAGCCATAGCGAAAGTTGCACTTCTGGAAAATTGTGTTGTCCCACGTGTCGGGAGAGTTTCGAGAGAAAGCAAGATTTGAACAATCACATGGTTTGCCACCAGGTCGACAGGCCACACGCTTGTCGGACTTGCGGCAATTTATTTCGCTCGAAATCTCATCTCCAGACTCACATGACTCAAGTGCACAATGCCGAAAAGCCACACAAGTGTACCATTTGCGGCTCTGACTTTCATCGTCCTTCGAGTCTCTCGAATCACATGAAAATTCATACTTATGTTGCTGGAAGAGCTCTGGTGCAAACGGAAACGAGCGGCCAATCCGAGACGAGCCGTAAATGGGGCGAAGACAATCAGAACACCGGAACTTCCGGTAGCTACGAAGTACAATGGTCCGTGCCCTATAATTTCGATCCTGGAGTCGAAAGCATCCCCGGGAACACAGAAAAAATGGATACTCTTCAGGAATTCACTGTCATGCCAAACGGCGAAGTAACACATTTCGAATATACCAGCCAGGAGCCTCTTACACCTCCTGTTAATCGGTACAACCTCGGTATAAACAACTTCGCTAATTCGGAGTCTGTCGTGAAAATTGAGAACCTTCCGTTCGCTGCAATTGATTCCAAGAGTTATCCGGAGCCTGAGATAAGTGACAGCAGTGTGAAGAACTATCCTTGCACCCAGTGCGGTGCGAACTTTTCAAGGCCTACCGCTTTGGCTTCTCACGCGAAAATTCACGCGGTGAAAACCTGGTCGATGCCCATCGAGTGCCAATACTGCGATAAACAATTTCAAGACTCCACTCATTTGTCCAGTCATCAAACAACATGCGCTAAAAAATTGATGCAAGCGAACCTTGAGAACGGAGTGACGAACGGAAAATGGGGCAAACACGCTTGTACCGAGTGCGGCAAAAAGTTTACCaccaagcaaaaaatgtttcgcCACCAATGGATTCACCGGAAAAAGACTCATACCTGCGAGATCTGCGGCTCTCAAttcgaaaaacaaaatcaattggACGAGCATCGATTGTCAGCGCATCCTGGCGATTCTCCGTTTACCTGTACCGAGTGTGGCAAGAGTTTTGTCTCGAGGCAAGGACTCTGGGAACACGGGCGAACTCACGCGGGAAGCCCGGCCCATTTTCACTGTGACACTTGTTCCAAGACTTTCTCGTCGAGGCAAGGCTACCTTATCCACCATCGTACTCACACCGGAGAACGACCTTACGGTTGTAAATTTTGTTGGAAAGCGTTTCGCGACGGTGGCACATTGAGGAAACACGAGCGTATACACACGGGCGAACGTCCTCACGTTTGTCCCCTGTGTTCACGGGCGTTCAACCAAAAAGTTGTTTTACGAGAGCACGTCAGATGGGTTCATGCGGCTGGTAAGAACGAAACGGAGGTCAGTGGGCCTCCTTATCCTTGTCCTCTGTGCGGCTCCCTCAACCAAGATCGTGACGAGTTGTGCGCCCATATCGTCAAACACTCGGACCAAATGATCGCCGAGGCCAAAGCGAAAACCAACAACAATGCAACGAAAACAAAAGCGGCGAAGAAGAGGACGAAACCTGGTACTACTGAAAAATCAGCGAAGGCAGGAAACATCCAAAGATCTATCTCAAGGAACGAAGAGAGCGAAGGTCTTCTGTCGATCCCGACTAACGGTGCCGAAGACGAAGCAACCCGGATGATCCTCAAGAACCAGGAAATCGAGGAACAACTTCTTCTGGTTACAGAGGACAAAAACCTCGTGAATATCTCCTCAGAACAGGAAAACAGAAACGATCAGGCTCTTCTCGTCTCTGGACAAACCGCGATTATCACGAAAATACGGCAAACCGACGTTCTTCAGCTCATACAAAATGCCAAACGGCATGAGACTCTCCGCCTGATTGCCTCAGGCAAACCAAACAACACGCTCCATCTCATCACCAAACAAAATCAATCTTTGCCCGTCCTCGCAATCAGAAATCCTCAGAGCCACGATAACTTTTCCAGCCAAATGCCCGATCCAGTTGACTCACAGGTCGCCATCGATAACGATCACATGGCCCATAACACCTTGCAAGACGGATGCCTCATGGACGACGAAGCCAATCACGTTAGCGTTGAAGAAGTTGCACAATTGTTTCACGAACAAGAACAGCAGGAGAGTGATAATGACGACGGGGACGAGGAAATGGTTTGTGGCATATGCGGCGACGATTTCGATGATAAAAATGTTCTTATGGAACACGTCAAGATtcatatttaa
- Protein Sequence
- MEPHENEYVSFPIHDTIQESIVSHEEVCEPSEDCILTESLSGVVVEEVNSVISEGQVAVEILTEHSDEEEEKSMYPIYIKQEEQHQYTSGDDESMAVEALRQLGGMYPCFEDKKISCPKCLGQFNQVEFQSHSESCTSGKLCCPTCRESFERKQDLNNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMTQVHNAEKPHKCTICGSDFHRPSSLSNHMKIHTYVAGRALVQTETSGQSETSRKWGEDNQNTGTSGSYEVQWSVPYNFDPGVESIPGNTEKMDTLQEFTVMPNGEVTHFEYTSQEPLTPPVNRYNLGINNFANSESVVKIENLPFAAIDSKSYPEPEISDSSVKNYPCTQCGANFSRPTALASHAKIHAVKTWSMPIECQYCDKQFQDSTHLSSHQTTCAKKLMQANLENGVTNGKWGKHACTECGKKFTTKQKMFRHQWIHRKKTHTCEICGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVSGPPYPCPLCGSLNQDRDELCAHIVKHSDQMIAEAKAKTNNNATKTKAAKKRTKPGTTEKSAKAGNIQRSISRNEESEGLLSIPTNGAEDEATRMILKNQEIEEQLLLVTEDKNLVNISSEQENRNDQALLVSGQTAIITKIRQTDVLQLIQNAKRHETLRLIASGKPNNTLHLITKQNQSLPVLAIRNPQSHDNFSSQMPDPVDSQVAIDNDHMAHNTLQDGCLMDDEANHVSVEEVAQLFHEQEQQESDNDDGDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509076;
- 90% Identity
- iTF_00265940;
- 80% Identity
- -