Hdid009752.1
Basic Information
- Insect
- Hyposoter didymator
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold67:4993750-4996404[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0041 0.35 11.3 4.1 2 20 142 160 141 163 0.94 2 13 0.001 0.089 13.2 4.0 1 23 169 192 169 192 0.93 3 13 3.1e-05 0.0027 17.9 3.2 1 23 198 220 198 220 0.98 4 13 1.5e-06 0.00013 22.1 0.1 1 23 355 377 355 377 0.98 5 13 0.00032 0.027 14.8 1.1 2 21 387 406 386 407 0.93 6 13 0.00047 0.04 14.3 1.9 1 20 429 448 429 451 0.92 7 13 0.0013 0.11 12.8 0.4 1 23 456 479 456 479 0.94 8 13 1e-06 8.9e-05 22.6 0.3 1 23 485 507 485 507 0.98 9 13 0.0017 0.15 12.5 6.3 1 23 514 536 514 536 0.98 10 13 0.00029 0.025 14.9 0.4 3 23 544 564 542 564 0.97 11 13 0.00034 0.029 14.7 0.2 1 23 570 593 570 593 0.96 12 13 0.41 35 5.0 0.1 1 23 607 629 607 629 0.93 13 13 0.089 7.6 7.1 0.0 2 23 862 883 861 883 0.96
Sequence Information
- Coding Sequence
- ATGGAGACTCACGAGAACGAGTATGTTTCGTTTCCCATGCACGCTACCATCCAAGAGAACGTTGTGTCCCACGAGGAAGTATGCGAGCCGTCAGAGGATTGCATATTGCAAGAGAGTTTGTCGGGCGTGGTAGTCGAAGAGGTAAATTCTGTGATACCGGAAGGGCAAGTTGCGGTGGAAATATTGACGGAGCATTCGGACGAGGAGGAGGAAAAATGTATATATCCAATTTACATAAAGCAGGAGGAGCAACATCAATATACATCGGGAGATGACGAGTCAATGGCGGTGGAGGCGCTGCGTCAATTGGGGGGAATGTATCCATGCTTTGAGGACAAAAAGATAAATTGTCCCAAGTGTTTGGGGCAATTCAACGAAACGGAGTATCAGAGTCACGGCGAAAATTGCACATCGGGAAAATTGTGTTGCCCGACGTGTCGGGAGAGTTTTGAAAGAAAGCAAGATTTGAACAATCACATGGTTTGTCACCAGGTGGACAGGCCGCACGCTTGTCGAACTTGTGGAAATTTGTTTCGCTCAAAATCTCATCTCCAGACACACATGAGCCAAGTGCACAAAGCTGAAAAGCCTCACAAGTGTACAATCTGTGGCTCTGATTTTCATCGTCCTTCGAGTCTTTCGAATCACATGAAAATTCACACATACGTTGCTGGACGAGCTCTGGTGCAAACGGAAACGAGTGGCCAATCGGAAACGAGTCGTAAATGGGGCGAGGACAATCAGAATACGGCGACGCCCGGTAATTTCGAGGTCCATTGGTCAGTGCCCTATAATTTCGATCCTGGCGTCGAGAGTATCCCTGGGAACTCTGAAAAAATGGATACTCTTCAAGAATTCACTGTGATGCCAAACGGCGAGGTCACACATTTCGAGTACTCCGCTCAAGAGTCTCTCGCAACACCTCCCGGCAATCGGTACAACATCGGCATCAACAGCTTCGCCAATTCCGAGTCTCTCGTAAAAGTCGAGAATCTTCCGTTCGCTACGATCGATTCCAAGAGTTATTCGGGCCCAGAATTGAGCGAAAGCGGCGCGAAGAGTTATCCTTGCACTCAGTGCGGAGCGAGCTTTTCCAGGCCTTCCTCTTTAGCTTCCCACGCGAAAATCCATGCCGTTAAAAGCTGGTCGATGCCCATCGAGTGTCAATACTGCGACAAGCAGTTTCAAGACTCCACTCATTTGTCCAGTCATCAAACAACTTGCGCTAAAAAATTGATGCAAGCGAACCTGGAGAACGGAGGAACGAACGGGAAATGGGGAAAACACGCTTGTGCCGAGTGTGGAAAAAAGTTTACGACGAAGCAAAAAATGTTCAGACACCAATGGATCCATCGGAAAAAAACTCACGCCTGTGAAATTTGCGGCACTCAATTCGAAAAACAAAATCAACTGGACGAGCATCGCCTTTCGGCCCATCCTGGCGATTCCCCGTTCACCTGCACCGAGTGTGGCAAGAGTTTTGTCTCCAGGCAAGGACTCTGGGAACACGGACGAACGCACGCCGGAAGCCCGGCTCACTTTCACTGCGACACTTGTTCCAAGACCTTCTCCTCGAGGCAAGGCTATCTCATCCACCATCGTACTCACACCGGTGAACGACCTTACGGTTGTAAATTTTGTTGGAAAGCGTTTCGCGACGGAGGTACATTGAGGAAGCACGAGCGTATCCACACGGGTGAACGTCCTCACGTGTGTCCTCTGTGTTCACGAGCCTTCAACCAAAAAGTTGTTTTACGAGAGCATGTTCGATGGGTACACGCAGCTGGTAAGAATGAGACCGAAGTCATTGGCCCGCCGTATCCTTGTCCTTTGTGCGGGGCGCTCAACCAAGATCGCGACGAATTGTGCGCCCACATCGTCAAACACTCGGACCAAATGATCGCCGAGGCGAAAGCAAAAACGAACAACAATGCGCCGAAAGCGAAGGCAACGAAGAAAAGAACGAAATCCGGCGCGACCGGTAAATCGGCCAAAACGGATGACCTTGAAAGGTCGATCTCTAGGAACGACGAGACCGAAGCTCTGCTATCGATCCCGACCGACAGTGCTGAAGACGATGCCGCGCGGATGATCCTCAAAGAACAGGAAATCGAGCAACAACTTCTTCTGGTTACCGGGGACAAGGACCTTGTCGACGTCTCCCCCGACCAAGACAAAAGAAACGCTGAAACTCTTCTTGATTCTGACCAAACTACGATTATCCCCAAAATTCGACAAACCGACGTTCTCCAGCTCATTCAAAACTCAAAACGTCACGAAGCTCTTCGTCTCATCGCTTCCGGCAAATCGAACAACACTCTTCATCTTATTACCAAACAGAATCAATCTTTGCCCGTACTCGCCATCAGGAATCCCCAGAGTCACGATAACTTTTCCAGCCAAATGTCCGATCCCGTTGATTCACGTATTGCCGTCGACGACGATAACATCCCGGATACCAGCTTACAAGACGGATGTCTCATGGACGACCAAACCAATCACGTCAGCGCTGAACAAGTCGCGCAATTGTTTCAGGAACCGCCACAGCAAGAGAGTGATAATGACGACGGGGACGAGGAAATGGTTTGTGGCATATGCGGCGATGACTTCGACGATAAAAATGTTCTCATGGAACACGTCAAAATTCATATTTAA
- Protein Sequence
- METHENEYVSFPMHATIQENVVSHEEVCEPSEDCILQESLSGVVVEEVNSVIPEGQVAVEILTEHSDEEEEKCIYPIYIKQEEQHQYTSGDDESMAVEALRQLGGMYPCFEDKKINCPKCLGQFNETEYQSHGENCTSGKLCCPTCRESFERKQDLNNHMVCHQVDRPHACRTCGNLFRSKSHLQTHMSQVHKAEKPHKCTICGSDFHRPSSLSNHMKIHTYVAGRALVQTETSGQSETSRKWGEDNQNTATPGNFEVHWSVPYNFDPGVESIPGNSEKMDTLQEFTVMPNGEVTHFEYSAQESLATPPGNRYNIGINSFANSESLVKVENLPFATIDSKSYSGPELSESGAKSYPCTQCGASFSRPSSLASHAKIHAVKSWSMPIECQYCDKQFQDSTHLSSHQTTCAKKLMQANLENGGTNGKWGKHACAECGKKFTTKQKMFRHQWIHRKKTHACEICGTQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVIGPPYPCPLCGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKAKATKKRTKSGATGKSAKTDDLERSISRNDETEALLSIPTDSAEDDAARMILKEQEIEQQLLLVTGDKDLVDVSPDQDKRNAETLLDSDQTTIIPKIRQTDVLQLIQNSKRHEALRLIASGKSNNTLHLITKQNQSLPVLAIRNPQSHDNFSSQMSDPVDSRIAVDDDNIPDTSLQDGCLMDDQTNHVSAEQVAQLFQEPPQQESDNDDGDEEMVCGICGDDFDDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01509076;
- 90% Identity
- iTF_00265940;
- 80% Identity
- -