Vcan007579.1
Basic Information
- Insect
- Venturia canescens
- Gene Symbol
- -
- Assembly
- None
- Location
- scaffold:9401-54524[-]
Transcription Factor Domain
- TF Family
- AF-4
- Domain
- AF-4 domain
- PFAM
- PF05110
- TF Group
- Unclassified Structure
- Description
- This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental disabilities [1]. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.7e-08 0.00059 19.5 2.1 28 149 38 160 15 171 0.70 2 3 0.2 4.4e+03 -3.2 18.2 462 484 208 230 184 242 0.59 3 3 1.7e-08 0.00036 20.2 0.8 321 381 268 329 252 345 0.83
Sequence Information
- Coding Sequence
- ATGTCGGTCCAGGCGGAACAGGCGGCAGCGGGAGGCGGTCCGGACACCCGCCACGGCCATCACCATCACGGTCATCACAATCACGGGCATCATCACACAAATCCACACGCGTCCGCTTCCTCATCGCTCTTTCCCCGTGCCCCAGTTAGGGTAAATCCGGACGCTCAGGATCGCACAACGCTTCAGATACAATCGAAACTGGGTGATTATACCCTCGTGAAGCATTTGCTCGACGAGCCCAAGCGTCTGATTGGGATCGAGGGCATACCGGCTAGTCCAGCGCCCGCGGGCGCTTCTGCTGCTAGAATACCCTCGGTCACCAACACATGCAGGAGCTCACCGTCGTCCCAAGAGTTCAAGAAGCCCGGAAGCGGACCTCGCTCCTCGTCAGGCTCGAACTCATCTTCCTCGGCGAGCAACGCCAACACCGGTACAACCACCAATCCAACCTCCTCGACATCCTCGAGTCACGCGTCACAAAGAGGTGGATTCGTCAAACCTGCCGACGGCAAACCGCCTTACGGCGGCAGAGGGGGATATCCTGGCTTACCGGTCAAACACGGTGGCAACAGCAACGATCATCGGAGCCACGGAATTCTTCCGGCCAAGGGACCACCTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATTGTCCACCTCCTCCTCTTCGTCAACTACGAATCCTCATACGGGAACAACGGGTTCGAGCGGTAGTCTCGTGACTTCCGGTAACGGCTCTTCAACCGTTACGAACACCAGCTCCGGTACTCCTGTTAACTCCAACAGAATACACTCGGCAGCTTCCAGATTATCGAGGCTACCCCTCGACAATGGTACGGTTTCTCGGCACGGTATTAACGAAAACTCGGCCGATTTGGAGCACATTCTAAAGGAAATGACGATGCCGCCCACACCACTCACGGCCATAGCTCAGACACCGAGGAAAGAGCTCGAGTCCAAGTTCACTTTCAATCCGGTCCTGGCTAAGCTGACCGAGGTGCCATCAGTCGAGCCATCGAAGCCACCGCCTCCTCCACGAAAATCAAAGAGCAAGTAA
- Protein Sequence
- MSVQAEQAAAGGGPDTRHGHHHHGHHNHGHHHTNPHASASSSLFPRAPVRVNPDAQDRTTLQIQSKLGDYTLVKHLLDEPKRLIGIEGIPASPAPAGASAARIPSVTNTCRSSPSSQEFKKPGSGPRSSSGSNSSSSASNANTGTTTNPTSSTSSSHASQRGGFVKPADGKPPYGGRGGYPGLPVKHGGNSNDHRSHGILPAKGPPLSSSSSSSSSSSSSSLSTSSSSSTTNPHTGTTGSSGSLVTSGNGSSTVTNTSSGTPVNSNRIHSAASRLSRLPLDNGTVSRHGINENSADLEHILKEMTMPPTPLTAIAQTPRKELESKFTFNPVLAKLTEVPSVEPSKPPPPPRKSKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00265685;
- 90% Identity
- iTF_00265685;
- 80% Identity
- -