Basic Information

Insect: Vanessa tameamea
Gene Symbol: -
Assembly: GCA_037043105.1
Location: CM073305.1:221922-225444[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4e-07 2.9e-05 24.7 0.5 1 23 161 183 161 183 0.98

2 14 0.0013 0.092 13.7 0.8 1 23 189 212 189 212 0.96

3 14 0.00014 0.01 16.7 0.2 1 23 218 240 218 240 0.97

4 14 7.6e-06 0.00056 20.7 2.2 1 23 246 268 246 268 0.99

5 14 3.2e-06 0.00023 21.9 3.2 1 23 274 296 274 296 0.98

6 14 6.8e-07 5e-05 24.0 1.1 1 23 302 325 302 325 0.95

7 14 7.5e-06 0.00055 20.7 4.9 1 23 331 353 331 353 0.98

8 14 3.1e-05 0.0023 18.7 0.5 1 23 359 381 359 381 0.97

9 14 0.00017 0.013 16.4 1.0 1 23 387 409 387 409 0.99

10 14 1e-07 7.3e-06 26.6 0.8 1 23 415 437 415 437 0.98

11 14 1.2e-06 8.6e-05 23.2 1.4 1 23 443 465 443 465 0.98

12 14 0.11 8.4 7.5 3.0 1 23 471 490 471 490 0.94

13 14 1.5e-06 0.00011 22.9 0.8 1 23 496 518 496 518 0.98

14 14 0.00061 0.045 14.7 5.4 1 23 524 546 524 546 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4e-07	2.9e-05	24.7	0.5	1	23	161	183	161	183	0.98
2	14	0.0013	0.092	13.7	0.8	1	23	189	212	189	212	0.96
3	14	0.00014	0.01	16.7	0.2	1	23	218	240	218	240	0.97
4	14	7.6e-06	0.00056	20.7	2.2	1	23	246	268	246	268	0.99
5	14	3.2e-06	0.00023	21.9	3.2	1	23	274	296	274	296	0.98
6	14	6.8e-07	5e-05	24.0	1.1	1	23	302	325	302	325	0.95
7	14	7.5e-06	0.00055	20.7	4.9	1	23	331	353	331	353	0.98
8	14	3.1e-05	0.0023	18.7	0.5	1	23	359	381	359	381	0.97
9	14	0.00017	0.013	16.4	1.0	1	23	387	409	387	409	0.99
10	14	1e-07	7.3e-06	26.6	0.8	1	23	415	437	415	437	0.98
11	14	1.2e-06	8.6e-05	23.2	1.4	1	23	443	465	443	465	0.98
12	14	0.11	8.4	7.5	3.0	1	23	471	490	471	490	0.94
13	14	1.5e-06	0.00011	22.9	0.8	1	23	496	518	496	518	0.98
14	14	0.00061	0.045	14.7	5.4	1	23	524	546	524	546	0.97

Sequence Information

Coding Sequence: atgacTGAATTTAACATAAGTGGTATCTGTCGTTGTTGTCACACTCAGGGTACATTCAAAAGTTTAAGCGATTCATACCTTTACGAGGGACGTGAAGAggtctatttaaatatgttacaacAAGCTTTTAATATAGATATCAAACCAACACAAGAAGTATCAGCAGCATTTTCAATTTGCGATATCTGTACACCGCGGTTAATAGATGCATTTCTCTTCCACCAACAGGTGTTGTCCTGTGAACaatcattttatcaatattataacacACATTTCAAAGAAGTGAAGCAGGAATCACAATTTGATCAAAATGAAGACAGTTCTGAGCAAAAGTTTGATGATGataCATTCAGCGACAGAGGGGATGTTGATGATCAGCCCTTGTCCACCCTTAGGAGTCACTCTGCTGAAGATACAAGTTGGATGCAGCTCCCTGTTGCTGAAGACAACAAAACGCCTCAGAGAACGAAATCAAAAAAGTTCAGCTGTGAGATATGCGACAAGAAGTTTTCCTACAACGGCTCGTTGGAAGTGCACAGACGGGTGCACAGCGGCGAGAAGAACTACCTCTGTCGCATCTGCAACAGCACATACAGCCTCAACAAAGAACTTATTAAACACATAAACACGACACACTCACAAAATGGATCGTTTCCCTGCACAGTTTGCGCAAAGGTCTTCGAAAAAGCGCGCCTGCTGAAGAACCACCTGTCTGTGCATTTCGGTGACGAGAAGTTCAAATGCAGCCAGTGCGAGAAGGAGTTCCAGAGGAAGAAGGGCTTGAAGGAACACATGAAGATACACACGGGCGAGAAGAACTTCACGTGTACCATTTGCAACAAGTCGTTCGGCCACAATCAGACCTTAAAGTCGCATATACTGACCCACACGGGGGAGAGGCCGTACGTCTGTGACGTGTGCGGCAGGAGGTTCCCCCAGCGGACGCATCTGAAGCGGCACATATTCATAATTCACACGGGAATCAAGCCCCATCGCTGTAAAGTGTGCAATAAACAATTCTCTAGCAAAAGTTACTTGTCGATACACCAGCGGCAGCACACGGGAGAGCGGCCGTTCGCGTGTGACGTGTGTAAGAAGGACTTCACGGCCTACACCACGCTCAAAGTCCACATGCGAGTCCACACCGGCCTCAAGCCCTACGTGTGTTCGTTCTGCGACCGTCAGTTCGCGCAGATGGCGAGTTTCAAGCTGCACGAGCGAACACACACGGGCGAGAGGCCGTTCTCTTGCAAAGTCTGCAAGAAAGCGTTTTCGGATAACGGCTACTTGAAGATCCACATGCGCGTGCACACGGGCGAGAAGCCCTTCAACTGCGACGTGTGCAAGCGGTCGTTCCGGGAGACGGGTCAGCTGAAACGGCACATGCGGGTGCACACGGGCGTCAAGCCCTACACGTGTAAAGTCTGCAATAAACAAATCGGTAATTTATCGAAACACATGCGCGTCCATTCGGACGAAAAACCGTTTAATTGTAATGTTTGCAACAAACAGTTCTCAATAAACGGCAATTTGAAGTTGCACATGCGCGTGCACACCGGCGAGCGGCCGTTCAGCTGTGACGTGTGCAACAGTCACTTCACACAGAGCAGCGGTCTGAAAAGGCATAAATGTGTTCATATTGGCAAAATTGATTGA
Protein Sequence: MTEFNISGICRCCHTQGTFKSLSDSYLYEGREEVYLNMLQQAFNIDIKPTQEVSAAFSICDICTPRLIDAFLFHQQVLSCEQSFYQYYNTHFKEVKQESQFDQNEDSSEQKFDDDTFSDRGDVDDQPLSTLRSHSAEDTSWMQLPVAEDNKTPQRTKSKKFSCEICDKKFSYNGSLEVHRRVHSGEKNYLCRICNSTYSLNKELIKHINTTHSQNGSFPCTVCAKVFEKARLLKNHLSVHFGDEKFKCSQCEKEFQRKKGLKEHMKIHTGEKNFTCTICNKSFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGIKPHRCKVCNKQFSSKSYLSIHQRQHTGERPFACDVCKKDFTAYTTLKVHMRVHTGLKPYVCSFCDRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFNCDVCKRSFRETGQLKRHMRVHTGVKPYTCKVCNKQIGNLSKHMRVHSDEKPFNCNVCNKQFSINGNLKLHMRVHTGERPFSCDVCNSHFTQSSGLKRHKCVHIGKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01080898; iTF_00985353; iTF_00986467; iTF_00695881; iTF_01507415; iTF_01078393; iTF_01506533; iTF_00824940; iTF_01080076; iTF_01079228;
90% Identity: iTF_01080898; iTF_01080076; iTF_01506533; iTF_01078393; iTF_01079228; iTF_01507415;
80% Identity: -