Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999954.1:300138-305260[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 3.9e-07 3.3e-05 24.6 0.6 1 23 178 200 178 200 0.98

2 14 0.00034 0.029 15.3 0.8 1 23 206 229 206 229 0.95

3 14 0.00013 0.011 16.6 0.2 1 23 235 257 235 257 0.97

4 14 2.9e-05 0.0024 18.7 1.8 1 23 263 285 263 285 0.99

5 14 3e-06 0.00026 21.8 3.2 1 23 291 313 291 313 0.98

6 14 6.5e-07 5.5e-05 23.9 1.1 1 23 319 342 319 342 0.95

7 14 7.1e-06 0.0006 20.6 4.9 1 23 348 370 348 370 0.98

8 14 3e-05 0.0025 18.7 0.5 1 23 376 398 376 398 0.97

9 14 0.00017 0.014 16.3 1.0 1 23 404 426 404 426 0.99

10 14 1.5e-07 1.3e-05 25.9 0.4 1 23 432 454 432 454 0.97

11 14 9.2e-06 0.00078 20.3 4.4 1 23 460 482 460 482 0.98

12 14 0.11 9 7.5 3.0 1 23 488 507 488 507 0.94

13 14 1e-06 8.6e-05 23.3 0.7 1 23 513 535 513 535 0.98

14 14 0.00056 0.047 14.7 5.3 1 23 541 563 541 563 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	3.9e-07	3.3e-05	24.6	0.6	1	23	178	200	178	200	0.98
2	14	0.00034	0.029	15.3	0.8	1	23	206	229	206	229	0.95
3	14	0.00013	0.011	16.6	0.2	1	23	235	257	235	257	0.97
4	14	2.9e-05	0.0024	18.7	1.8	1	23	263	285	263	285	0.99
5	14	3e-06	0.00026	21.8	3.2	1	23	291	313	291	313	0.98
6	14	6.5e-07	5.5e-05	23.9	1.1	1	23	319	342	319	342	0.95
7	14	7.1e-06	0.0006	20.6	4.9	1	23	348	370	348	370	0.98
8	14	3e-05	0.0025	18.7	0.5	1	23	376	398	376	398	0.97
9	14	0.00017	0.014	16.3	1.0	1	23	404	426	404	426	0.99
10	14	1.5e-07	1.3e-05	25.9	0.4	1	23	432	454	432	454	0.97
11	14	9.2e-06	0.00078	20.3	4.4	1	23	460	482	460	482	0.98
12	14	0.11	9	7.5	3.0	1	23	488	507	488	507	0.94
13	14	1e-06	8.6e-05	23.3	0.7	1	23	513	535	513	535	0.98
14	14	0.00056	0.047	14.7	5.3	1	23	541	563	541	563	0.97

Sequence Information

Coding Sequence: ATGACTGAATTTCATATCACAAGTGGTATCTGTCGTTGTTGTCACACTCAGGGTACATTCAAAAGTTTAAGCGACTCTTATCTTTACGAGGGACGTGAAGAGCTCTATTTAAATATGTTACAACAAGCTTTTAACATAGATATCAAACCGACACAAGAAGTATCAGCAGCATTTTCAATTTGTGATGTCTGCTCTCCCCGATTAATAGATGCATTTCTCTTCCATCAACAAGTGTTGTCCTGTGAACAATCATTTTATCAATATTATAACACACATTTCAAAGGCTCATTCTGTGATAAGGAAATTAAAAACGAAGCTACAGAGCAAGTGACTGAAGTAAAGCAGGAAACCCAATTCAATCAAAATGAAGACAGTTCAGAGCAAAAGTTTGATGATGATACATTTAGCGATAGAGGGGATGTTGATGATCAGCCCTTGTCCACCCTTAGGAGTTACTCTGAAGATACAACTTGGACGCAGCTACCTGATGTCGAAGATACCAAAACGCCTCAGAGAACGAAATCAAAAAAGTTCAGCTGTGACATATGCGACAAGAAGTTTTCGTACAACGGTTCGCTGGAAGTGCACAGACGCGTGCACAGCGGCGAGAAGAGCTATCTGTGCCGTATCTGCAACACCACATATAGCCTCAACAAGGAACTAATCAAACACATCAGCACGACTCACTCACAGGACGGTGCGTTTCCCTGCACCGTCTGCGCGAAGGTCTTCGAAAAGGCGCGTCTCCTGAAGAACCATCTCTCCGTGCATTTCGGCGACGAGAAGTTCAAGTGCAGCCAGTGCGCGAAGGAGTTCCAGAGGAAGAAGGGCCTGAAGGAACACATGAAGATACACACGGGCGAGAAGAACTTCACGTGTACCATTTGCAACAAGTCGTTCGGACACAATCAGACCCTGAAGTCGCACATATTGACCCACACGGGGGAGAGGCCGTACGTGTGTGACGTGTGCGGAAGGCGATTCCCCCAGCGGACGCATCTGAAGCGTCACATATTCATAATTCACACGGGAATCAAGCCTCATCGGTGTAAAGTGTGCAATAAACAGTTCTCCAGTAAGAGTTACCTGTCGATCCACCAGCGCCAGCACACGGGCGAGAGGCCGTTCGCGTGCGACGTGTGTAAAAAAGACTTCACGGCGTACACGACACTCAAAGTCCACATGCGAGTCCACACGGGCCTCAAGCCGTACGTGTGCTCGTTCTGCGACCGCCAGTTCGCACAGATGGCGAGCTTCAAGTTGCACGAGCGCACGCACACCGGCGAGCGTCCGTTCGCGTGCAAGGTGTGCAAGAAGGCGTTCTCGGACAACGGCTACTTGAAGATCCACATGCGCGTGCACACGGGCGAGAAGCCCTTCCACTGCGATGTGTGCAAGCGCTCGTTCCGCGAGACGGGCCAGCTGAAGCGTCACCAGCGCACGCACACCGGCGTCAAGCCCTACACGTGCAAGGTCTGCAACAAGCAGATCGGGAATCTCTCCAAGCACATGCGTGTGCACTCGGACGAAAAGCCGTACAACTGTAATGTGTGCAACAAACAGTTCTCTATAAACGGCAATCTGAAGTTGCATATGCGCGTTCACACCGGCGAACGCCCGTTCAGCTGCGAGGTGTGTAACAGCCACTTCACACAGAGCAGCGGTCTGAAAAGGCATAAATGTGTTCATATTGGCAAAATTGATTGA
Protein Sequence: MTEFHITSGICRCCHTQGTFKSLSDSYLYEGREELYLNMLQQAFNIDIKPTQEVSAAFSICDVCSPRLIDAFLFHQQVLSCEQSFYQYYNTHFKGSFCDKEIKNEATEQVTEVKQETQFNQNEDSSEQKFDDDTFSDRGDVDDQPLSTLRSYSEDTTWTQLPDVEDTKTPQRTKSKKFSCDICDKKFSYNGSLEVHRRVHSGEKSYLCRICNTTYSLNKELIKHISTTHSQDGAFPCTVCAKVFEKARLLKNHLSVHFGDEKFKCSQCAKEFQRKKGLKEHMKIHTGEKNFTCTICNKSFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGIKPHRCKVCNKQFSSKSYLSIHQRQHTGERPFACDVCKKDFTAYTTLKVHMRVHTGLKPYVCSFCDRQFAQMASFKLHERTHTGERPFACKVCKKAFSDNGYLKIHMRVHTGEKPFHCDVCKRSFRETGQLKRHQRTHTGVKPYTCKVCNKQIGNLSKHMRVHSDEKPYNCNVCNKQFSINGNLKLHMRVHTGERPFSCEVCNSHFTQSSGLKRHKCVHIGKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508243;
90% Identity: iTF_01508243;
80% Identity: -