Basic Information

Insect: Nymphalis polychloros
Gene Symbol: -
Assembly: GCA_905220585.1
Location: HG992270.1:472581-476728[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.5e-07 6.6e-05 23.6 0.6 1 23 179 201 179 201 0.98

2 14 0.00052 0.046 14.7 0.5 1 23 207 230 207 230 0.96

3 14 0.00013 0.011 16.6 0.2 1 23 236 258 236 258 0.97

4 14 8.6e-06 0.00076 20.3 1.5 1 23 264 286 264 286 0.99

5 14 2.9e-06 0.00025 21.8 3.2 1 23 292 314 292 314 0.98

6 14 6.2e-07 5.5e-05 23.9 1.1 1 23 320 343 320 343 0.95

7 14 6.8e-06 0.0006 20.6 4.9 1 23 349 371 349 371 0.98

8 14 2.8e-05 0.0024 18.7 0.5 1 23 377 399 377 399 0.97

9 14 0.00028 0.025 15.5 1.0 1 23 405 427 405 427 0.98

10 14 9e-08 8e-06 26.5 0.8 1 23 433 455 433 455 0.98

11 14 1.1e-06 9.3e-05 23.2 1.4 1 23 461 483 461 483 0.98

12 14 0.098 8.6 7.5 2.9 1 23 489 508 489 508 0.94

13 14 7.3e-07 6.5e-05 23.7 0.8 1 23 514 536 514 536 0.98

14 14 0.00055 0.049 14.6 5.4 1 23 542 564 542 564 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.5e-07	6.6e-05	23.6	0.6	1	23	179	201	179	201	0.98
2	14	0.00052	0.046	14.7	0.5	1	23	207	230	207	230	0.96
3	14	0.00013	0.011	16.6	0.2	1	23	236	258	236	258	0.97
4	14	8.6e-06	0.00076	20.3	1.5	1	23	264	286	264	286	0.99
5	14	2.9e-06	0.00025	21.8	3.2	1	23	292	314	292	314	0.98
6	14	6.2e-07	5.5e-05	23.9	1.1	1	23	320	343	320	343	0.95
7	14	6.8e-06	0.0006	20.6	4.9	1	23	349	371	349	371	0.98
8	14	2.8e-05	0.0024	18.7	0.5	1	23	377	399	377	399	0.97
9	14	0.00028	0.025	15.5	1.0	1	23	405	427	405	427	0.98
10	14	9e-08	8e-06	26.5	0.8	1	23	433	455	433	455	0.98
11	14	1.1e-06	9.3e-05	23.2	1.4	1	23	461	483	461	483	0.98
12	14	0.098	8.6	7.5	2.9	1	23	489	508	489	508	0.94
13	14	7.3e-07	6.5e-05	23.7	0.8	1	23	514	536	514	536	0.98
14	14	0.00055	0.049	14.6	5.4	1	23	542	564	542	564	0.97

Sequence Information

Coding Sequence: ATGACTGAATTCCATAACATAAGCGGTATCTGTCGTTGTTGTCACACTCAGGGTACATTCAAAAGTTTAAGCGATTCGTGCCTTTACGAGGGACGTGAAGAGATCTATTTAAATATGTTACAACAAGCTTTTAATATAGATATCAAACCAATGCCAGAAATTTCCACAGCATTTTCAATTTGTGAAGTCTGTGCTCCACGTTTACATGATGCATATATCTTCCACCAACAAGTGTTGTCCTGTGAGCAGTCATTCTACCAGTATTATAACACACATTATAAAGCTACATTCTGTGGTAAAAAAATTAAAGATGAGCTCATGGAGCAAACTGCTGAAGTAAAGGAGGAATCACATTTTAATCAAAATGGTGATATTCCAAACCAAAAGTTTGATGATGACGATTTTAGCGACAGAGGGGACGTGGACGATCAGCCCTTATCCACCCTTAGAAGTCATTCTGGTCAAGATACAAGTTGGACGCCACTATCTCATGAAGCAGACAACAAAACTCTTCAGCGAACGATATCGAAGAAGTTCAGTTGTGAGATATGTGACAAGAAGTTTTCGTACAACGGTTCGCTGGAAGTTCACAAGAGGATACACAGCGGCGAGAAGAGCTACCTCTGTCGCATCTGTAATACTGGATACAGTCTCAACAAAGAACTCATCAAACACATAAACACGACGCACTCACAAAACGGATCGTTCCCGTGCACAGTTTGTGCAAAGGTCTTCGAGAAAGCGCGCCTTTTGAAGAACCACCTATCCGTGCACTTCGGTGACGAGAAGTTCAAATGTGGCCAGTGCGAGAAGGAGTTCCAGAGGAAGAAGGGATTGAAGGAACACATGAAGATACACACGGGCGAGAAGAACTTTACGTGCACCATTTGTAATAAGTCGTTCGGCCACAATCAGACGTTGAAGTCTCACATACTGACTCACACGGGGGAGAGGCCTTACGTGTGTGACGTATGCGGTAGGAGGTTCCCCCAGCGAACACACTTGAAGCGACACATATTCATAATTCACACGGGAATCAAACCGCACAGGTGCAAAGTGTGCAATAAACAGTTTTCGAGTAAGAGCTACTTGTCGATACACCAGCGACAGCACACGGGCGAGAGGCCGTTCGCCTGTGAGGTCTGTAAGAAGGACTTCACGGCGTATACGACGCTGAAGGTCCACATGCGAGTACACACCGGCCTCAAGCCGTACATATGCTCGTTCTGTGATCGACAGTTCGCACAGATGGCGAGCTTCAAACTCCACGAACGGACGCACACAGGCGAGCGGCCGTTTTCTTGCAAAGTCTGCAAGAAAGCGTTTTCGGATAACGGCTACTTGAAGATACACATGCGTGTACACACGGGCGAGAAGCCCTTCAACTGTGACGTGTGCAAGCGTTCGTTCCGCGAGACGGGTCAGCTGAAACGACACATGCGTGTACACACGGGCGTTAAACCGTACACTTGTAAAGTTTGTAATAAACAAATCGGTAATTTATCGAAACATATGCGCGTTCATTCGGACGAGAAGCCGTTTAACTGTAATATATGTAACAAACAGTTCTCTATAAATGGTAATTTGAAGTTACACATGCGCGTGCACACCGGCGAGCGGCCTTTCAGCTGTGACGTGTGTAACAGTCACTTCACACAGAGCAGTGGTCTGAAAAGGCATAAGTGTGTTCATATCGGTAAAATTGATTAA
Protein Sequence: MTEFHNISGICRCCHTQGTFKSLSDSCLYEGREEIYLNMLQQAFNIDIKPMPEISTAFSICEVCAPRLHDAYIFHQQVLSCEQSFYQYYNTHYKATFCGKKIKDELMEQTAEVKEESHFNQNGDIPNQKFDDDDFSDRGDVDDQPLSTLRSHSGQDTSWTPLSHEADNKTLQRTISKKFSCEICDKKFSYNGSLEVHKRIHSGEKSYLCRICNTGYSLNKELIKHINTTHSQNGSFPCTVCAKVFEKARLLKNHLSVHFGDEKFKCGQCEKEFQRKKGLKEHMKIHTGEKNFTCTICNKSFGHNQTLKSHILTHTGERPYVCDVCGRRFPQRTHLKRHIFIIHTGIKPHRCKVCNKQFSSKSYLSIHQRQHTGERPFACEVCKKDFTAYTTLKVHMRVHTGLKPYICSFCDRQFAQMASFKLHERTHTGERPFSCKVCKKAFSDNGYLKIHMRVHTGEKPFNCDVCKRSFRETGQLKRHMRVHTGVKPYTCKVCNKQIGNLSKHMRVHSDEKPFNCNICNKQFSINGNLKLHMRVHTGERPFSCDVCNSHFTQSSGLKRHKCVHIGKID

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508243;
90% Identity: iTF_01508243;
80% Identity: -