Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999952.1:6174366-6177439[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.1 6e+02 1.8 0.6 2 17 57 72 56 73 0.83

2 14 0.00068 0.058 14.4 0.6 1 23 221 243 221 243 0.97

3 14 0.0044 0.37 11.9 3.5 1 23 253 275 253 275 0.98

4 14 0.014 1.2 10.2 0.1 2 23 299 320 298 320 0.97

5 14 8.1e-05 0.0069 17.3 1.2 1 23 332 354 332 354 0.99

6 14 0.0021 0.18 12.8 3.1 1 23 362 385 362 385 0.92

7 14 2e-05 0.0017 19.2 3.1 2 23 392 413 391 413 0.95

8 14 8.7e-06 0.00074 20.4 2.8 1 23 419 441 419 441 0.97

9 14 1.6e-07 1.4e-05 25.8 0.8 1 23 447 469 447 469 0.96

10 14 8.1e-05 0.0069 17.3 4.7 1 23 475 497 475 497 0.98

11 14 1.1e-07 9.4e-06 26.3 1.0 1 23 503 525 503 525 0.98

12 14 0.0002 0.017 16.1 0.4 1 23 531 553 531 553 0.98

13 14 9.8e-05 0.0083 17.1 3.4 1 21 559 579 559 581 0.96

14 14 3.7e-06 0.00031 21.5 0.1 1 23 587 609 587 609 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.1	6e+02	1.8	0.6	2	17	57	72	56	73	0.83
2	14	0.00068	0.058	14.4	0.6	1	23	221	243	221	243	0.97
3	14	0.0044	0.37	11.9	3.5	1	23	253	275	253	275	0.98
4	14	0.014	1.2	10.2	0.1	2	23	299	320	298	320	0.97
5	14	8.1e-05	0.0069	17.3	1.2	1	23	332	354	332	354	0.99
6	14	0.0021	0.18	12.8	3.1	1	23	362	385	362	385	0.92
7	14	2e-05	0.0017	19.2	3.1	2	23	392	413	391	413	0.95
8	14	8.7e-06	0.00074	20.4	2.8	1	23	419	441	419	441	0.97
9	14	1.6e-07	1.4e-05	25.8	0.8	1	23	447	469	447	469	0.96
10	14	8.1e-05	0.0069	17.3	4.7	1	23	475	497	475	497	0.98
11	14	1.1e-07	9.4e-06	26.3	1.0	1	23	503	525	503	525	0.98
12	14	0.0002	0.017	16.1	0.4	1	23	531	553	531	553	0.98
13	14	9.8e-05	0.0083	17.1	3.4	1	21	559	579	559	581	0.96
14	14	3.7e-06	0.00031	21.5	0.1	1	23	587	609	587	609	0.98

Sequence Information

Coding Sequence: ATGGATATTACAGTATTAAAAAAGAATATTTGCAGAACATGCTTGAGCGAGGCGTCTAATTGTAAATCTCTATTAAGCAAAATGGAAGGCGAAGATCGAACGCTCTGTGAAGTACTGTCTTTTGTTACAAGTGTTGATATTTCTATTAGTGAAGAATATCCTAAGCAAGTGTGTAACGATTGCCATATTATGATATGCAAAGCCGACGATTTCAAAAAGAGATGTATACAATCCGAAAGTATATTAAAAAGTGGAATTTTTATGTCACCATTCGATGAACTTATAAAGAACGAAATTATAAATAGCACGGATTTCGATATTACAAAATCGCAGCTACAGATCGATAATCAAATCCTCATGGATAATATTTATATGAAAAAAAACTCTCAAACATTAGACGTAGAACTACCAATGATAGATAATTTTGATACTTTAACCGATAACTATAAATATGAAATAGTTAAGGAGGAAAGAGATGATATACGCAACGATATGGACATATCAGATGATATAGGAAATAATTTACTCGATTACACACAGACAGACAATCCAGTCAATACAAATATATGTTTATGTGGTTTTATTTGTAACGATAATGCTAAGTTCGAAAGCCATACTAAGGAATGTAAAATATTCGTAAATAAAAACGATAGGGATGTTCATTCATGTCCGCTATGCAATGAGATTTTTCCTAATTTAAAACGACTGCAAGTTCATATTTATAGTCACAAGGAAACATCAAATGGATTGGGCAATCACGAGTGCCCCAAATGTAAGAGCAGTTTCATTTGCAAATCTTTACTGATAGCTCATTTAAAAACACACAAAAACCGAATACGGGTAAAACACAAGAAATCAAAAACGGAACCAAAAGATAATATCACAATACCCCTGAAATGCGTTAAGTGTGAAGAAAAATTACCCAATTTAGACGAACTAGCGCTTCACTTGAAGAAGCACATGCACAATGAAACCGAACAAGAAGAGCAAAACTATCAATGTTCGATGTGTATGCGAAAGTTTGTGCGAAAGATGTCTTTAATCGCTCACATCAAACGTCACGAAGATAAAGCTCAAATGAAGTTCACTTGCAAGACTTGCAAACGTGAATTCCAACACCAGGCGCATTTAGACAACCATATTGTTTTAGTACATTCAAAAGAAAAGGGCCTAACTTGCAACAAGTGCGGCAAGAGCTTCATCACACAAGACTGCTTAGACCACCACATGGAAGGGCATAAGGTTGATAAGAAACATCACTGTACTGTGTGCGGTAAGACGTTTACAATTATGTCGGCTTTGACAGACCATATCAGGACTCATACTGGTGAAAAGCCGTTCCTTTGTTCGATATGTGGACGAGGATTCAGTCAGAAGAATAATTTAGTTCAGCACATGAGGAGGCATGAGGGATTGAAGCCGTTCAAATGTGAACACTGTGAGAGAAGATTTGTCTCGAAAGGTGAACTGCACGCTCACAACCGCAAGCACAGTGGAGCTCATCCCTTCATCTGTGACGATTGCGGGAACAGCTTCACAACTTCCAGCTCCTTGACCAAGCATCGAAGAATCCACAGTGGGGAGAGACCATACGCCTGTGACCTCTGTTCAATGAGGTTCGCTGTGCTCGGAACGCTTAAGAACCACAGACGCACACACACAGGGGAAAAGCCCTACCAGTGTTCCCATTGCGAAAAGGCGTTCATACAGAGAACTGATCTGGTCTCCCATATCCGGTGCCATACTGGTGAAAGGCCATATATTTGTACCAGTTGTGGCCAGGCGTTCAGAAAGGCGTCCGCGTTGAAAGTTCACATAAAAATTCATGGCAAAGAACAAATGCTGATGTAA
Protein Sequence: MDITVLKKNICRTCLSEASNCKSLLSKMEGEDRTLCEVLSFVTSVDISISEEYPKQVCNDCHIMICKADDFKKRCIQSESILKSGIFMSPFDELIKNEIINSTDFDITKSQLQIDNQILMDNIYMKKNSQTLDVELPMIDNFDTLTDNYKYEIVKEERDDIRNDMDISDDIGNNLLDYTQTDNPVNTNICLCGFICNDNAKFESHTKECKIFVNKNDRDVHSCPLCNEIFPNLKRLQVHIYSHKETSNGLGNHECPKCKSSFICKSLLIAHLKTHKNRIRVKHKKSKTEPKDNITIPLKCVKCEEKLPNLDELALHLKKHMHNETEQEEQNYQCSMCMRKFVRKMSLIAHIKRHEDKAQMKFTCKTCKREFQHQAHLDNHIVLVHSKEKGLTCNKCGKSFITQDCLDHHMEGHKVDKKHHCTVCGKTFTIMSALTDHIRTHTGEKPFLCSICGRGFSQKNNLVQHMRRHEGLKPFKCEHCERRFVSKGELHAHNRKHSGAHPFICDDCGNSFTTSSSLTKHRRIHSGERPYACDLCSMRFAVLGTLKNHRRTHTGEKPYQCSHCEKAFIQRTDLVSHIRCHTGERPYICTSCGQAFRKASALKVHIKIHGKEQMLM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01508253; iTF_01079233; iTF_01080904;
90% Identity: iTF_01508253;
80% Identity: -