Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR990010.1:2915573-2918182[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7 6.5e+02 1.8 0.6 2 17 58 73 57 74 0.83

2 15 3.7 3.4e+02 2.6 0.1 5 21 197 213 194 214 0.92

3 15 0.011 0.97 10.6 0.1 3 23 228 248 227 248 0.98

4 15 0.018 1.6 9.9 1.7 2 23 259 280 258 280 0.97

5 15 0.0087 0.81 10.9 0.1 2 23 306 327 305 327 0.97

6 15 4.2e-05 0.0039 18.2 1.4 1 23 339 361 339 361 0.99

7 15 0.0052 0.48 11.6 2.3 1 23 369 392 369 392 0.95

8 15 3.4e-05 0.0031 18.5 2.6 2 23 399 420 398 420 0.95

9 15 8.6e-06 0.0008 20.3 2.8 1 23 426 448 426 448 0.97

10 15 1.6e-07 1.5e-05 25.8 0.8 1 23 454 476 454 476 0.96

11 15 8e-05 0.0074 17.3 4.7 1 23 482 504 482 504 0.98

12 15 1.1e-07 1e-05 26.3 1.0 1 23 510 532 510 532 0.98

13 15 0.0002 0.018 16.1 0.4 1 23 538 560 538 560 0.98

14 15 9.7e-05 0.0089 17.0 3.4 1 21 566 586 566 588 0.96

15 15 3.7e-06 0.00034 21.5 0.1 1 23 594 616 594 616 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7	6.5e+02	1.8	0.6	2	17	58	73	57	74	0.83
2	15	3.7	3.4e+02	2.6	0.1	5	21	197	213	194	214	0.92
3	15	0.011	0.97	10.6	0.1	3	23	228	248	227	248	0.98
4	15	0.018	1.6	9.9	1.7	2	23	259	280	258	280	0.97
5	15	0.0087	0.81	10.9	0.1	2	23	306	327	305	327	0.97
6	15	4.2e-05	0.0039	18.2	1.4	1	23	339	361	339	361	0.99
7	15	0.0052	0.48	11.6	2.3	1	23	369	392	369	392	0.95
8	15	3.4e-05	0.0031	18.5	2.6	2	23	399	420	398	420	0.95
9	15	8.6e-06	0.0008	20.3	2.8	1	23	426	448	426	448	0.97
10	15	1.6e-07	1.5e-05	25.8	0.8	1	23	454	476	454	476	0.96
11	15	8e-05	0.0074	17.3	4.7	1	23	482	504	482	504	0.98
12	15	1.1e-07	1e-05	26.3	1.0	1	23	510	532	510	532	0.98
13	15	0.0002	0.018	16.1	0.4	1	23	538	560	538	560	0.98
14	15	9.7e-05	0.0089	17.0	3.4	1	21	566	586	566	588	0.96
15	15	3.7e-06	0.00034	21.5	0.1	1	23	594	616	594	616	0.98

Sequence Information

Coding Sequence: ATGGATAATACAGTATTAAAAAAGAATAACATTTGCAGAACATGTTTGAGCGAGGCGTCTAATTGTAAATCTCTATTGAGCAAAATGGAAGGTGAAGATCGTACGCTATATGAAGTTTTATCTTTTGTTACAAGCGTCGATATATCTATTAGCGAAGAATATCCTAAGCAAGTGTGTAATGATTGCCATATTATGATATGTAAAGCTGACGATTTCAAAAAGAGATGTATACAATCCGAAAGCATACTAAAAAGTGGTATTTTTTTGTCACCATTTGACGATCTTATAAAGAACGAAATTATAAATAGCACGGATTTCGATATAACAAAATCACAACTACCGATTGATAACCAACTTCTCATTGATAATATTTATTTGAAAAAGAACTCTCAAACATTAGAAGTCGAATTGCCAATTATAGAAAATTTTGATACATTAAGTTCAGATAATTATAAATACGAAAATGTTGTTAAAGAAGAAAGGGATGAAGACTCACTACGACATGATATGGATATATCAGATGACATTGTTATTGGAAATAGTAACAGTCTCGAATACACACAGAAAGACTTAAACCCAAATATATGCATTTGTGGTTTTATATGTATAGATAACACCGAGTTTGAAACCCACACTAAAGAATGTAAGATTTTTCTAAATAAATATGACGGAGATGTTCTATGTCCGTTATGTAAAGATAATTTCCCTAACTTAAAACTACTGCAGGCCCACATTTATACTCATAAAGAAACTTCAAATGGTACGAGTAATCTTGAGTGTCCCAAGTGTAAGAATAAGTTTATTTGCCAAACTTTATTGATAGCTCATTTAAAAACGCATAAAAACAGAATTAGAGTTAAACATAAGAAATCAAAAACCGAACCTAAAGATAGAGATAATATAACAATACCTCTTAAGTGTGTTAAATGTGAAGAACGACTGCCAAACTTAGACGAATTAGCGATACACTTGAAAAAACACATGCACCACGAAACAGAAGACCATGAACAAAACTATCAATGTTCCATGTGCATGAGAAAATTTGTCCGTAAGACATCGCTGATCGCTCACATCAAACGTCATGAAGATAAAGCCCAAATGAAATTCACGTGCAAAGCTTGCAAGCGTGAATTCCAACACCAGGCTCATTTGGATAACCATATTATTTTAGTACATTCAAAGGAGAAAGGCCTCACTTGTAACAAATGCGGTAAAAGTTTTATCACACAAGACTGTCTAGACCACCATATAGAAGGTCACAAGGTCGATAAGAAACACCATTGTACGGTGTGCGGGAAGACATTTACAATTATGTCGGCTTTGACTGATCATATTAGGACTCATACAGGGGAAAAGCCGTTTCTCTGCTCGATTTGCGGACGAGGATTTAGTCAGAAGAATAATTTAGTTCAACACATGAGGCGGCATGAGGGTTTGAAGCCGTTCAAGTGTGAACACTGCGAGAGAAGATTTGTGTCGAAGGGTGAACTGCACGCTCACAATCGTAAGCACAGTGGAGCTCACCCATTCATCTGTGATGATTGCGGGAACAGTTTCACCACGTCGAGTTCTTTAACGAAGCATCGTAGAATCCACAGCGGAGAAAGACCATACGCATGCGACCTCTGTTCAATGAGGTTCGCTGTGCTTGGTACACTGAAGAATCACAGGCGCACACACACAGGGGAGAAGCCGTACCAGTGTTCGCATTGTGAAAAGGCTTTCATACAAAGAACTGACCTGGTCTCCCATATCCGTTGCCATACTGGGGAAAGGCCATATATTTGTACCAGCTGCGGCCAAGCGTTCAGGAAAGCATCAGCCTTAAAAGTTCACATAAAAATACATGGCAAGGAATCTATGATGATGTAA
Protein Sequence: MDNTVLKKNNICRTCLSEASNCKSLLSKMEGEDRTLYEVLSFVTSVDISISEEYPKQVCNDCHIMICKADDFKKRCIQSESILKSGIFLSPFDDLIKNEIINSTDFDITKSQLPIDNQLLIDNIYLKKNSQTLEVELPIIENFDTLSSDNYKYENVVKEERDEDSLRHDMDISDDIVIGNSNSLEYTQKDLNPNICICGFICIDNTEFETHTKECKIFLNKYDGDVLCPLCKDNFPNLKLLQAHIYTHKETSNGTSNLECPKCKNKFICQTLLIAHLKTHKNRIRVKHKKSKTEPKDRDNITIPLKCVKCEERLPNLDELAIHLKKHMHHETEDHEQNYQCSMCMRKFVRKTSLIAHIKRHEDKAQMKFTCKACKREFQHQAHLDNHIILVHSKEKGLTCNKCGKSFITQDCLDHHIEGHKVDKKHHCTVCGKTFTIMSALTDHIRTHTGEKPFLCSICGRGFSQKNNLVQHMRRHEGLKPFKCEHCERRFVSKGELHAHNRKHSGAHPFICDDCGNSFTTSSSLTKHRRIHSGERPYACDLCSMRFAVLGTLKNHRRTHTGEKPYQCSHCEKAFIQRTDLVSHIRCHTGERPYICTSCGQAFRKASALKVHIKIHGKESMMM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01507419;
90% Identity: iTF_01079233;
80% Identity: -