Basic Information

Insect: Nymphalis io
Gene Symbol: -
Assembly: GCA_905147045.1
Location: LR989923.1:6192763-6195630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 6.5 5.9e+02 1.8 0.6 2 17 58 73 57 74 0.83

2 15 7.5 6.8e+02 1.6 0.4 5 21 195 211 194 212 0.92

3 15 0.0026 0.24 12.4 0.1 3 23 227 247 226 247 0.98

4 15 0.016 1.5 9.9 1.7 2 23 257 278 256 278 0.97

5 15 0.007 0.64 11.1 0.1 2 23 304 325 303 325 0.97

6 15 7.5e-05 0.0068 17.3 1.2 1 23 337 359 337 359 0.99

7 15 0.0048 0.44 11.6 2.3 1 23 367 390 367 390 0.95

8 15 3.2e-05 0.0029 18.5 2.6 2 23 397 418 396 418 0.95

9 15 8.1e-06 0.00073 20.3 2.8 1 23 424 446 424 446 0.97

10 15 1.5e-07 1.3e-05 25.8 0.8 1 23 452 474 452 474 0.96

11 15 7.5e-05 0.0068 17.3 4.7 1 23 480 502 480 502 0.98

12 15 5.7e-08 5.2e-06 27.1 0.9 1 23 508 530 508 530 0.98

13 15 0.00018 0.017 16.1 0.4 1 23 536 558 536 558 0.98

14 15 9e-05 0.0082 17.0 3.4 1 21 564 584 564 586 0.96

15 15 3.4e-06 0.00031 21.5 0.1 1 23 592 614 592 614 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	6.5	5.9e+02	1.8	0.6	2	17	58	73	57	74	0.83
2	15	7.5	6.8e+02	1.6	0.4	5	21	195	211	194	212	0.92
3	15	0.0026	0.24	12.4	0.1	3	23	227	247	226	247	0.98
4	15	0.016	1.5	9.9	1.7	2	23	257	278	256	278	0.97
5	15	0.007	0.64	11.1	0.1	2	23	304	325	303	325	0.97
6	15	7.5e-05	0.0068	17.3	1.2	1	23	337	359	337	359	0.99
7	15	0.0048	0.44	11.6	2.3	1	23	367	390	367	390	0.95
8	15	3.2e-05	0.0029	18.5	2.6	2	23	397	418	396	418	0.95
9	15	8.1e-06	0.00073	20.3	2.8	1	23	424	446	424	446	0.97
10	15	1.5e-07	1.3e-05	25.8	0.8	1	23	452	474	452	474	0.96
11	15	7.5e-05	0.0068	17.3	4.7	1	23	480	502	480	502	0.98
12	15	5.7e-08	5.2e-06	27.1	0.9	1	23	508	530	508	530	0.98
13	15	0.00018	0.017	16.1	0.4	1	23	536	558	536	558	0.98
14	15	9e-05	0.0082	17.0	3.4	1	21	564	584	564	586	0.96
15	15	3.4e-06	0.00031	21.5	0.1	1	23	592	614	592	614	0.98

Sequence Information

Coding Sequence: ATGGATAATACAGTATTAAAAAAGAATAACATTTGCAGAACATGTTTGAGCGAGGCGTCTAATTGTAAGTCTTTATTGAGCAAAATGGAAGGTGAAGATCGTACGCTTTATGAAGTTCTATCTTTTGTTACAAGCGTCGATATATCTATTAGCGAAGAATATCCTAAACAAGTGTGTAATGATTGCCATATTATGATATGTAAAGCTGACGATTTCAAAAAGAGATGTATACAATCCGAAAGCATATTAAAAAGTGGTATTTTTTTGTCATTCGACGATCTTATAAAGAACGAAATTATAAATAGCACCGATTTCGATATAACAAAATCACAATTACCGATTGATAACCAACTTCTCATTGATAATATTTATTTGAAAAAAAACTCTCGAACAGTAGAAGTCGAATTGCCAATTATAGAAAATTTTGATACATTAAGTTCAGATAATTATAAATATGAAAATGTTAAAGAAGAAAGGGATGAAGATATACTACGACATGATATGGATATATCAGATGACATTGTTATCGGAAATAGTAACAGTCTCGACTACACACAGAAAGACTTAACTACAAATATATGCATTTGTGGTTTTATATGTATTGATAACACCAAGTTTGAAACCCACACTAAAGAATGTAAGATTTTTGTAAATAAATATGACGGAGATGTTCTTTTATGTCCGTTATGTAATGATAATTTCCCTAATTTAAAACAACTGCAGGCCCACATTTATACTCATAAGGAAACTTCAAATGGTAGTAGTCTTGAGTGCCCCAAGTGTAAGAATAAGTTTATTTGTCAAACTTTATTGATAGCTCATTTAAAAACACATAAAAATAGAATTAGAGTTAAACATAAGAAATCAAAAACCGAACCCAAAGATAAAGATAATATTACAATACCTCTTAAGTGTGTTAAATGTGAAGAACGATTACCTAACTTAGACGAATTAGCGGTACACTTGAAAAAACACATGCACAACGAAACAGAAGACCAAGAACGAAACTATCAATGTTCTATGTGCATGAGAAAATTTGTCCGTAAGATGTCACTGATTGCTCACATAAAACGTCATGAAGATAAAGCCCAAATGAAATTCACGTGCAAAGCTTGCAAACGTGAATTTCAACACCAGGCTCATTTGGATAACCATATTATCTTAGTACATTCAAAGGAGAAAGGCCTGACTTGTAATAAATGCGGTAAAAGTTTCATCACACAAGACTGTCTAGACCACCACATAGAAGGTCACAAGGTTGATAAGAAACACCATTGTACGGTGTGCGGGAAGACATTTACAATTATGTCGGCTTTGACTGATCATATTAGGACTCATACAGGGGAAAAGCCGTTTCTCTGTTCGATTTGCGGACGAGGATTTAGTCAGAAGAATAATTTAGTTCAACATATGAGGCGGCATGAGGGTTTGAAGCCTTTCAAGTGTGAACACTGCGAGAGAAGATTTGTGTCGAAGGGTGAACTGCACGCTCACAATCGTAAGCACAGTGGAGCTCACCCATTCGTCTGTGATGACTGTGGGAATAGTTTCACCACGTCCAGCTCTTTAACGAAGCATCGTAGAATCCACAGCGGGGAAAGACCATACGCATGCGACCTCTGTTCAATGAGGTTCGCTGTGCTTGGAACACTGAAGAATCACAGGCGCACACACACAGGGGAAAAGCCGTACCAGTGTTCGCATTGTGAAAAGGCTTTCATACAAAGAACTGACTTGGTCTCTCATATCCGTTGCCACACTGGGGAAAGACCATATATTTGTACCAGCTGCGGCCAAGCGTTCAGGAAAGCGTCAGCCTTAAAAGTTCACATAAAAATACATGGCAAGGAAACTATGATGGTATAA
Protein Sequence: MDNTVLKKNNICRTCLSEASNCKSLLSKMEGEDRTLYEVLSFVTSVDISISEEYPKQVCNDCHIMICKADDFKKRCIQSESILKSGIFLSFDDLIKNEIINSTDFDITKSQLPIDNQLLIDNIYLKKNSRTVEVELPIIENFDTLSSDNYKYENVKEERDEDILRHDMDISDDIVIGNSNSLDYTQKDLTTNICICGFICIDNTKFETHTKECKIFVNKYDGDVLLCPLCNDNFPNLKQLQAHIYTHKETSNGSSLECPKCKNKFICQTLLIAHLKTHKNRIRVKHKKSKTEPKDKDNITIPLKCVKCEERLPNLDELAVHLKKHMHNETEDQERNYQCSMCMRKFVRKMSLIAHIKRHEDKAQMKFTCKACKREFQHQAHLDNHIILVHSKEKGLTCNKCGKSFITQDCLDHHIEGHKVDKKHHCTVCGKTFTIMSALTDHIRTHTGEKPFLCSICGRGFSQKNNLVQHMRRHEGLKPFKCEHCERRFVSKGELHAHNRKHSGAHPFVCDDCGNSFTTSSSLTKHRRIHSGERPYACDLCSMRFAVLGTLKNHRRTHTGEKPYQCSHCEKAFIQRTDLVSHIRCHTGERPYICTSCGQAFRKASALKVHIKIHGKETMMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01507419;
90% Identity: iTF_01080904;
80% Identity: -