Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999953.1:5652933-5657532[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.12 10 7.3 0.8 1 21 64 84 64 85 0.96

2 27 0.0073 0.62 11.2 0.6 2 23 157 178 156 178 0.97

3 27 0.018 1.5 10.0 0.1 1 23 182 204 182 204 0.95

4 27 1.5 1.3e+02 3.9 0.7 1 15 209 223 209 232 0.78

5 27 0.012 0.99 10.5 0.6 1 23 238 261 238 261 0.97

6 27 0.0021 0.17 12.9 1.2 1 23 268 291 268 291 0.98

7 27 0.00035 0.03 15.3 0.7 1 23 298 320 298 320 0.97

8 27 0.0022 0.19 12.8 0.2 1 23 396 419 396 419 0.97

9 27 2.7 2.3e+02 3.1 1.3 3 23 447 468 445 468 0.94

10 27 0.021 1.8 9.7 2.6 1 23 490 512 490 512 0.98

11 27 0.00015 0.012 16.5 0.5 1 23 516 538 516 538 0.97

12 27 0.00066 0.056 14.4 0.4 1 21 572 592 572 595 0.90

13 27 0.086 7.3 7.8 0.4 1 23 653 675 653 675 0.95

14 27 0.016 1.3 10.1 0.2 2 23 700 722 699 722 0.95

15 27 0.0017 0.14 13.2 2.4 1 23 744 766 744 766 0.98

16 27 0.0044 0.38 11.8 4.6 1 21 770 790 770 792 0.95

17 27 0.31 26 6.0 0.2 3 23 799 820 797 820 0.90

18 27 0.075 6.3 8.0 2.7 1 23 861 883 861 883 0.94

19 27 0.13 11 7.2 0.3 2 23 907 929 906 929 0.94

20 27 0.0061 0.52 11.4 3.3 3 23 953 973 952 973 0.98

21 27 0.0018 0.15 13.1 3.4 3 23 979 999 978 999 0.97

22 27 0.0021 0.18 12.8 2.3 1 23 1006 1029 1006 1029 0.97

23 27 6.6e-05 0.0056 17.6 2.4 1 23 1035 1058 1035 1058 0.97

24 27 0.0043 0.36 11.9 0.7 1 23 1064 1087 1064 1087 0.97

25 27 0.00039 0.033 15.2 0.5 1 23 1093 1115 1093 1115 0.97

26 27 8.3e-07 7.1e-05 23.6 1.0 1 23 1121 1143 1121 1143 0.99

27 27 4.4e-05 0.0038 18.1 5.3 1 23 1149 1171 1149 1172 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.12	10	7.3	0.8	1	21	64	84	64	85	0.96
2	27	0.0073	0.62	11.2	0.6	2	23	157	178	156	178	0.97
3	27	0.018	1.5	10.0	0.1	1	23	182	204	182	204	0.95
4	27	1.5	1.3e+02	3.9	0.7	1	15	209	223	209	232	0.78
5	27	0.012	0.99	10.5	0.6	1	23	238	261	238	261	0.97
6	27	0.0021	0.17	12.9	1.2	1	23	268	291	268	291	0.98
7	27	0.00035	0.03	15.3	0.7	1	23	298	320	298	320	0.97
8	27	0.0022	0.19	12.8	0.2	1	23	396	419	396	419	0.97
9	27	2.7	2.3e+02	3.1	1.3	3	23	447	468	445	468	0.94
10	27	0.021	1.8	9.7	2.6	1	23	490	512	490	512	0.98
11	27	0.00015	0.012	16.5	0.5	1	23	516	538	516	538	0.97
12	27	0.00066	0.056	14.4	0.4	1	21	572	592	572	595	0.90
13	27	0.086	7.3	7.8	0.4	1	23	653	675	653	675	0.95
14	27	0.016	1.3	10.1	0.2	2	23	700	722	699	722	0.95
15	27	0.0017	0.14	13.2	2.4	1	23	744	766	744	766	0.98
16	27	0.0044	0.38	11.8	4.6	1	21	770	790	770	792	0.95
17	27	0.31	26	6.0	0.2	3	23	799	820	797	820	0.90
18	27	0.075	6.3	8.0	2.7	1	23	861	883	861	883	0.94
19	27	0.13	11	7.2	0.3	2	23	907	929	906	929	0.94
20	27	0.0061	0.52	11.4	3.3	3	23	953	973	952	973	0.98
21	27	0.0018	0.15	13.1	3.4	3	23	979	999	978	999	0.97
22	27	0.0021	0.18	12.8	2.3	1	23	1006	1029	1006	1029	0.97
23	27	6.6e-05	0.0056	17.6	2.4	1	23	1035	1058	1035	1058	0.97
24	27	0.0043	0.36	11.9	0.7	1	23	1064	1087	1064	1087	0.97
25	27	0.00039	0.033	15.2	0.5	1	23	1093	1115	1093	1115	0.97
26	27	8.3e-07	7.1e-05	23.6	1.0	1	23	1121	1143	1121	1143	0.99
27	27	4.4e-05	0.0038	18.1	5.3	1	23	1149	1171	1149	1172	0.96

Sequence Information

Coding Sequence: ATGAGAAATGAGGCCGCGTTAAAAATTGAGTCGTCTGAAAATTTGCTTACAGAAGATCCTCTGAGAGTTACAGAAAAAAAACGCTATCAGAGAAGCGCAAGAGCCGAATCAAGGCTGGCTACAAAGAAGAATGCGAGCGCTATTCTCGAATGTTGGACTCTCTGTCCGTTTAGGTGGAAGAGAAATCGATTCAAATGCGCTTACTGTGAGGATAACTTCATTGAATGTACGGAATTGAGAAATCACATCAGACTATGTTCGACTCAACACTGCGTTAAGGATATATACAGCAAATTCAAGGAGATGTCGCTTATAAATATTGACGTGACTGAAGCTAGCTGTAGGATATGTGCTATGCCCTTTCAAGGGGTAAACGAAATGCGTAATCACGTTATTGAGCACGGCTTCGACTTTGACACGTCACATCCAGATGGCGTTCTACCATTCTTCTTGGACAAAGAGTCATGGAAGTGCTTGATATGTCGAGAATCATTCAACAATTTTCTAAAGCTCTATGAACATATGAATATACACTATCAGCATTATATCTGTGCGACGTGTGGTAAAGGTTATATGACGGCACCTCGTTTGCGCAAGCATTCAGAGGTTCACATAAGTGGTACGTTTCCGTGTGATAAATGTAGGCAAGTTTTTACAATGCGTGCTGCACGAGATTATCACAAAGCTCACGCTCATGCAAAGGGTCCGCGCTACGAATGTCCACAGTGCAATATGAGATTTGAAGGCTACTATGAACGAATGAACCACTTAAACAAAGAGCATAGGGAGAAGGAAGTTTTGTATAAATGTGCCCATTGCGAGCTATCTTTCAAAACGAGTGGGAAAAGAGCCATCCACGTGAGATCAGTCCACTTTCCTCAGCAGCGAAACTTTGCCTGTCCCTTCTGTAAATGGTTGTTTAAAACTGGCTACGAATTAAAAAGGCATATGGTCAAACATACGGGCGAACGTCCCGCTCTTGCGGATTCAGATGGGGTTAAAGTTAGACGGGTTAGGAAGTTAAAGGAGAATGTTTGCGCCAGGCAGATACGACGACGTCGGCGAGCAAACAACGAATTGCCAGAGGAATCAGAGAAACGAATAGCGAAAACGATGATGCGTCGAAACGCAATGACGCTTCTCGAATCTTCCACGGCTTGGGCCTTTCGTTGGTTCCAAAGCGCGTATTATTGCTCGTACTGTGATGTCAAATTCGTTGATCCTTTACTTTTGCGCGGTCACGTAAACTCCTTTCATATTGCCGATGCACCTACTAAGCGAATATTTTCAAAACTCACCGAAAATAATATGGTAAAGGTAGATGTCTCGAATGTACATTGTAGAATTTGCAATTGCAGTATAGAAAGCATAGACGTTTTGAAAAAGCACTTAATATCTGTTCATGGAAAAACCCTTTACCCAGATTACAACGACGGCATACTGCCTTTTAAGCTCGATTCGAACGGTTTCGAGTGCCAAATATGTAGCGCGAATTTTACAAGTTTTTGCAAAATCAATGAACACATGAACACACACTTTAAGAACTATATTTGCGATGCATGCGGAAAGGCGTTCGTATCGAAATCACGGTTTAGGACGCACGTCCAATCGCACGAGATCGGTAGCTTTCCGTGTGGAGTTTGCGATGAAGTTCTAGAAACGAGGGTAGCTCGAATGTGTCATAGGTCGAGAGTTCACAGGAAGGGTTTTCGATACACATGCCCGCATTGTCCGGAAGTCTTTACCACTTATTACGCGAGAGCGAAGCATTTGGTAGATGGTCACGATCAGCAGAAGCAAAAATACGAATGTTTTACGTGTGGCGATGGAGTCGCAAAGGATATGTCAGTAAAAATTGAATGGAAAAAAGTAAGAAGAGTTACGGAAGATAAAGCAAATGCTGCCTTGATTCTCGAATGTTCGAACGCGGTGGCCTTTCGGTGGATGCGCGGGAAATTTATGTGCGCTTACTGCCCTAAAGTATGCGCAAACGTCAATGAAATACGTTCTCATAGCCTAGTGCACGATAAGCTTATCATTTTCCACAAACCAGAAGTTCGGAATTCATTCCCACTTAGAATTGATATAACAAATTTAAAGTGCAGTCTATGCGGTTTAACTTCCAGAAGCGTAATTGACTTAAAAACTCACTTGATAAAAGAACATGAGAAGAATTTTAACTCTAAATATAGCGATGGTGTAATTCCATTCGTGTTGACTAGCTCAGAATATCGCTGCGTCCACTGCGACACTTTGTTCGAGAGTTATATGAATTTATTTAGCCATATGAACGAACATTATCAGAGCTATGTTTGCTACACTTGCGGAAAAGGATTCTCCGCCAAGCATAAGTTACGAGCTCATCAGAAGTGTCACGAGACTGGAAAAATTGCTTGCACTAAATGTGACCTCGTATTTGTAAATCACGTGGTCAAAAATCGACATGTCGCTGTGATTCACGGGACGATCAAGACAGTTAATTGGAAACGGAGACGCAGGTTCTATAACGATCATAGAGATAACGCGGCAATTATAATCGAATACTCTAACGCCTGTCCGTTCCGATGGAAACGCGGTGCATTCGCTTGTTCGCACTGTCCGAGAACATTCGGTCACTTTCAAGACGTTTTCAACCACGCTCAGGAACATAGTAACCGCCTTGAAGCGATGAGATACGCGCGGCCATACGATAATGTAAAGATAGAAATAAGTAATCTTAAATGTGAAATTTGTCACGAAAGCATGAACGGTTTGGAACAACTTAAGGAACATTTGCTAAATGTCCACCAAAAGCCGATACATAAGGAACTGAGTCTGGGCGTGACGCCTTTCATTCTTCAGAATAAAGAAATGCTCTGTACGCACTGTGATGAACGCTTTTCTTTGTTTTCTAGATTGAATAGCCACATGAACCAACATTACCCGAATAATATTTGCTTTCACTGTGGGAAATCGTTCTCAGCCGTTCATCGATTGAAAGCCCATCAGTTGACTCACGAATCGAACGAAATGGAGCATAAATGCTCAAAATGTGACGAAGTATTCGACACTCGAGCTCTAAAAAACTATCACATAAATACAACACACGCGCCAGAGAATCGCTACCGATGCCCGTATTGCAATCTATCGTTCAAACGATACTCGGATCGGTTGAGGCATTTGAAACAGCTTCACAACCAAAGCGTCGAATATCCATGTCATTTGTGTTCAGCAGTTTTCGCCATGTCCGATCAAAGAACGAAGCACATTAAGAACGTTCATATAAAACACAAGCAATTTCAGTGCGACTTTTGTCCGAGCAAATTCGTGACTGCTGGGCAGTTGAAGAATCATCTTGTGAAGCATTCGGGACTGAGAGAATATCAGTGCAGCGTTTGTAAGAAGAGCTACGCAAGAGCTAGGACGTTGAAGGAGCACATGAGGATACACAATAATGATAGGCGATTTGTTTGTGAATATTGTAATAATGCTTTCATCCAAAAGTGCAGTCTTAAAAGCCATATGAGAACGCACCATCCAAACGCGGAAGCAGCTAAGATTGCAGTTTGA
Protein Sequence: MRNEAALKIESSENLLTEDPLRVTEKKRYQRSARAESRLATKKNASAILECWTLCPFRWKRNRFKCAYCEDNFIECTELRNHIRLCSTQHCVKDIYSKFKEMSLINIDVTEASCRICAMPFQGVNEMRNHVIEHGFDFDTSHPDGVLPFFLDKESWKCLICRESFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGTFPCDKCRQVFTMRAARDYHKAHAHAKGPRYECPQCNMRFEGYYERMNHLNKEHREKEVLYKCAHCELSFKTSGKRAIHVRSVHFPQQRNFACPFCKWLFKTGYELKRHMVKHTGERPALADSDGVKVRRVRKLKENVCARQIRRRRRANNELPEESEKRIAKTMMRRNAMTLLESSTAWAFRWFQSAYYCSYCDVKFVDPLLLRGHVNSFHIADAPTKRIFSKLTENNMVKVDVSNVHCRICNCSIESIDVLKKHLISVHGKTLYPDYNDGILPFKLDSNGFECQICSANFTSFCKINEHMNTHFKNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGVCDEVLETRVARMCHRSRVHRKGFRYTCPHCPEVFTTYYARAKHLVDGHDQQKQKYECFTCGDGVAKDMSVKIEWKKVRRVTEDKANAALILECSNAVAFRWMRGKFMCAYCPKVCANVNEIRSHSLVHDKLIIFHKPEVRNSFPLRIDITNLKCSLCGLTSRSVIDLKTHLIKEHEKNFNSKYSDGVIPFVLTSSEYRCVHCDTLFESYMNLFSHMNEHYQSYVCYTCGKGFSAKHKLRAHQKCHETGKIACTKCDLVFVNHVVKNRHVAVIHGTIKTVNWKRRRRFYNDHRDNAAIIIEYSNACPFRWKRGAFACSHCPRTFGHFQDVFNHAQEHSNRLEAMRYARPYDNVKIEISNLKCEICHESMNGLEQLKEHLLNVHQKPIHKELSLGVTPFILQNKEMLCTHCDERFSLFSRLNSHMNQHYPNNICFHCGKSFSAVHRLKAHQLTHESNEMEHKCSKCDEVFDTRALKNYHINTTHAPENRYRCPYCNLSFKRYSDRLRHLKQLHNQSVEYPCHLCSAVFAMSDQRTKHIKNVHIKHKQFQCDFCPSKFVTAGQLKNHLVKHSGLREYQCSVCKKSYARARTLKEHMRIHNNDRRFVCEYCNNAFIQKCSLKSHMRTHHPNAEAAKIAV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00985355;
90% Identity: iTF_01080082;
80% Identity: -